XLOC_032247 (slc6a22.2)


Basic Information

Item Value
gene id XLOC_032247
gene name slc6a22.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41144155 ~ 41161017 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062982
GTCTTGTTTACAACATAAGCCAAGAGTTGAAACCTGATTTTTGAACAACGGCTCGGGACCAACAGTCCTTATTCAGGAGCCATTGAAGCCGGTTTGACCACTCCTCAGGCTTTCTCTttgaggaagtttttttttttaaaccactaacCTACAAACAGGCACTCCAAAAAAGACATTCAAGACGGCGTCTTCCCAAATACCAGCATCATGGAGCACAGCTCAAGGCCAGCGGTGAAGCTGAACCTCTTGAATGGAGCCCTAGTGAAAGCCAGACCAAAACCACCAGCAagagagcagtgggccaataagctTGAGTTTCTCCTGGCGGTGGCAGGGCACATTATTGGCTTGGGGAATGTGTGGAGGTTTCCTTACTTGTGCTACAAGAATGGAGGAGGGGCATTTTTTGTGCCATATGTGCTGTTTCTCTTTACCTGTGGCATCCCACTTTTCTTTTTGGAGACTTCGCTGGGTCAGTTCACCAGTCAGGGTGGAATCACATGCTGGAGGAAAATATGTCCACTCTTCGAAGGTCTTGGTTTTGGCAGTCAAGTCGTTGTCCTCTATACTGGAGTCTACTACATTATTATACTTGCTTGGGCTTTCCTTTACCTCTTCTCATCCTTCACTTCAGAACTGCCATGGGCAAGCTGTAACAACTACTGGAACACACCAAGCTGCATGGAGTTCAGCGAGAGCAACATTACTGAATATTCACCAAATAAAACCACATCTCCTGTTATAGAGTTTTGGGAGAGAAGGATTTTAGGTTTGTCTGGGGGAATTGAACAGATTGGTAATGTGAGATGGGACTTGGCTCTCTGCCTCCTGTTGGCCTGGATCATCTGTTATTTCTGTGTGTGGAAGGGAGTGAAGTCCACAGGCAAGGTGGTGTACTTCACAGCTACCTTCCCTTATTTAATGTTGATAGTATTGCTGGTTCGTGGACTTACTCTTCCTGGAGCAATAAATGGCATCACCTTCTACCTCTATCCTGATCCATCACGTCTCAAAGACCCACAGGTGTGGATGGATGCAGGAAGCCAGATATTTTACTCCTATGGAGTTTGTACAGGAGTACTGACTGCACTGGGAAGCTACAACAAATATGACAACAACTGCTACAGGGACTGTGTATACCTGTGTCTGCTCAACAGCTTGACTAGCTTTGTGGCTGGTTTTGCTATATTTTCAGTCCTTGGCTTTATGGCAGATGAACAGGGGGTGGATATTTCGTTGGTGGCAGAGTCAGgtCCTGGTTTGGCGTTCATCGCTTACCCCCGTGCTGTAGCTCTGATGCCTTTGCCTCAGCTATGGGCGATTTTCTTCTTTATCATGATCATATTTCTGGGACTGGATAGTGAGTTTGTGTATCAGGAAGCCCTGGTTACGTCTATCTCAGATATGTATCCCTCATTCTTCCAAGTTGGACATCGGCGCAAATTTCTTCTCCTCTTCATTTGTTCTGCCAGCTTTTTTGTTGGTCTGCTGATGGTAACAGAGggTGGTCTGTATGTCTTCCAGCTTTTCGACTATTATGCCTGTAGTGGAATGACTCTTCTCACTTTTGCCATCCTTCAGTCCATCTGTGTTGGATGGGTTTATGGAGCTGACCGTCACTATGATTGCGTTGAGGATATGATTGGATATCGGCCATGGCCCTTTATGAAGTGCTGCTGGAAATATCTAACGCCAGCTATATGCACAGGAACTTTTATCTTCTCCTTGGTTCAATACACTCCTCTGAAGTTCAACAATGAGTATGAGTACCCCTGGTGGGGTTACGCCATCGGTGGCTTCTTCACCCTTTCCTCCACCCTGTTAGTTCCACTGTGGATGATTTATTTGGTCGGCACCACTCCAGGGTCTATGAGACAGGTAAAGATTTATAAAATGAACATTAATAAGAGTGAGAGCATTGTGCACCCCAGCTGA
>TCONS_00062983
CGGCTCGGGACCAACAGTCCTTATTCAGGAGCCATTGAAGCCGGTTTGACCACTCCTCAGGCTTTCTCTttgaggaagtttttttttttaaaccactaacCTACAAACAGGCACTCCAAAAAAGACATTCAAGACGGCGTCTTCCCAAATACCAGCATCATGGAGCACAGCTCAAGGCCAGCGGTGAAGCTGAACCTCTTGAATGGAGCCCTAGTGAAAGCCAGACCAAAACCACCAGCAagagagcagtgggccaataagctTGAGTTTCTCCTGGCGGTGGCAGGGCACATTATTGGCTTGGGGAATGTGTGGAGGTTTCCTTACTTGTGCTACAAGAATGGAGGAGGGGCATTTTTTGTGCCATATGTGCTGTTTCTCTTTACCTGTGGCATCCCACTTTTCTTTTTGGAGACTTCGCTGGGTCAGTTCACCAGTCAGGGTGGAATCACATGCTGGAGGAAAATATGTCCACTCTTCGAAGGTCTTGGTTTTGGCAGTCAAGTCGTTGTCCTCTATACTGGAGTCTACTACATTATTATACTTGCTTGGGCTTTCCTTTACCTCTTCTCATCCTTCACTTCAGAACTGCCATGGGCAAGCTGTAACAACTACTGGAACACACCAAGCTGCATGGAGTTCAGCGAGAGCAACATTACTGAATATTCACCAAATAAAACCACATCTCCTGTTATAGAGTTTTGGGAGAGAAGGATTTTAGGTTTGTCTGGGGGAATTGAACAGATTGGTAATGTGAGATGGGACTTGGCTCTCTGCCTCCTGTTGGCCTGGATCATCTGTTATTTCTGTGTGTGGAAGGGAGTGAAGTCCACAGGCAAGGTGGTGTACTTCACAGCTACCTTCCCTTATTTAATGTTGATAGTATTGCTGGTTCGTGGACTTACTCTTCCTGGAGCAATAAATGGCATCACCTTCTACCTCTATCCTGATCCATCACGTCTCAAAGACCCACAGGTGTGGATGGATGCAGGAAGCCAGATATTTTACTCCTATGGAGTTTGTACAGGAGTACTGACTGCACTGGGAAGCTACAACAAATATGACAACAACTGCTACAGGGACTGTGTATACCTGTGTCTGCTCAACAGCTTGACTAGCTTTGTGGCTGGTTTTGCTATATTTTCAGTCCTTGGCTTTATGGCAGATGAACAGGGGGTGGATATTTCGTTGGTGGCAGAGTCAGgtCCTGGTTTGGCGTTCATCGCTTACCCCCGTGCTGTAGCTCTGATGCCTTTGCCTCAGCTATGGGCGATTTTCTTCTTTATCATGATCATATTTCTGGGACTGGATAGTGAGTTTGTGTATCAGGAAGCCCTGGTTACGTCTATCTCAGATATGTATCCCTCATTCTTCCAAGTTGGACATCGGCGCAAATTTCTTCTCCTCTTCATTTGTTCTGCCAGCTTTTTTGTTGGTCTGCTGATGGTAACAGAGggTGGTCTGTATGTCTTCCAGCTTTTCGACTATTATGCCTGTAGTGGAATGACTCTTCTCACTTTTGCCATCCTTCAGTCCATCTGTGTTGGATGGGTTTATGGAGCTGACCGTCACTATGATTGCGTTGAGGATATGATTGGATATCGGCCATGGCCCTTTATGAAGTGCTGCTGGAAATATCTAACGCCAGCTATATGCACAGGAACTTTTATCTTCTCCTTGGTTCAATACACTCCTCTGAAGTTCAACAATGAGTATGAGTACCCCTGGTGGGGTTACGCCATCGGTGGCTTCTTCACCCTTTCCTCCACCCTGTTAGTTCCACTGTGGATGATTTATTTGGTCGGCACCACTCCAGGGTCTATGAGACAGAGAGTGAGAGCATTGTGCACCCCAGCTGAAGATCTTCCGGATCCAAAATGTCCAAAACAGAAGCTAAACACCGCTACTTTTGAGACATTCACAGATCTATTGACATTACGGACAGTACACATACAGAACTCTTTACCTCACAGAGACGCTGTCTGACCGGCCACTGCAttagttttcttgtttttaaccTCAAGTTCTGTGGCAAACATTTTTTGACATATTGTCATGTAATTTTCATCATAACGTATCATCTGATGGTTAAGGTACAGTAATGTTTATCCAAAGAACAGTTTTCTCAATTGATCGCACAGTTAGCTGAGAATGTAATTATGTTTGAACTGACAAGAAaaggctttttaaaatgtataattgtaataaatgtattgaagCTTTACTTCTAGAAAGCTTCTCTTTTAAGAGTGGAGTGTGTTTGTCTGATctgtaaatatgtataaaatatgaacTTTACAATGAGGCTGggattaaatatatgtattataca

Function

symbol description
slc6a22.2 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13).

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0043005 neuron projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042165 neurotransmitter binding molecular_function
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-628 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13).

Ensembl:

ensembl_id ENSDARG00000001354

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062982 False 1935 mRNA 0.46 15 41144155 41160544
TCONS_00062983 True 2332 mRNA 0.44 15 41144203 41161017

Neighbor

gene id symbol gene type direction distance location
XLOC_032246 fkbp5 coding upstream 26913 41096058 ~ 41117242 (+)
XLOC_032245 NA coding upstream 61170 41080510 ~ 41082985 (+)
XLOC_032244 entpd8 coding upstream 83732 41038757 ~ 41060423 (+)
XLOC_032243 tgfa coding upstream 134774 40992409 ~ 41009381 (+)
XLOC_032242 NA coding upstream 158020 40984597 ~ 40986135 (+)
XLOC_032248 opn1mw1 coding downstream 20852 41181869 ~ 41183823 (+)
XLOC_032249 opn1mw2 coding downstream 25303 41186320 ~ 41189460 (+)
XLOC_032250 opn1mw3 coding downstream 30465 41191482 ~ 41193419 (+)
XLOC_032251 AL732567.2 coding downstream 33670 41194687 ~ 41194801 (+)
XLOC_032252 opn1mw4 coding downstream 39483 41200500 ~ 41202554 (+)
XLOC_032231 NA non-coding upstream 488109 40652905 ~ 40656046 (+)
XLOC_032225 NA non-coding upstream 592163 40545858 ~ 40551992 (+)
XLOC_032222 CU463231.2 non-coding upstream 662378 40475711 ~ 40481777 (+)
XLOC_032256 dre-let-7j non-coding downstream 293774 41454791 ~ 41454873 (+)
XLOC_032260 NA non-coding downstream 604621 41765638 ~ 41773554 (+)
XLOC_032261 NA non-coding downstream 618132 41779149 ~ 41788414 (+)
XLOC_032263 NA non-coding downstream 735367 41896384 ~ 41915013 (+)

Expression


Co-expression Network