XLOC_032248 (opn1mw1)


Basic Information

Item Value
gene id XLOC_032248
gene name opn1mw1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41181869 ~ 41183823 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062984
GGGGTTGACCATCTCTTAGAGGAGTTGAACTGCTCATTCATATTTCCACATAGGCGGTTTTAATTTAGGTTTCAGTAAAAATGAACGGGACAGAAGGGAGCAACTTCTACATCCCCATGTCAAACAGGACTGGGCTTGTGCGAAGCCCTTATGATTACACCCAGTACTATCTGGCAGAACCATGGAAATTCAAGGCTCTGGCTTTCTACATGTTTCTACTGATCATTTTTGGATTTCCCATCAATGTCCTGACTTTGGTGGTTACAGCCCAGCACAAGAAACTCCGACAGCCGCTCAACTACATTTTGGTCAACTTAGCTTTTGCTGGCACAATTATGGTCATCTTTGGATTTACGGTTTCTTTCTACTGCTCACTTGTGGGCTACATGGCTCTTGGTCCATTAGGCTGTGTAATGGAGGGATTCTTCGCAACACTTGGAGGTCAGGTTGCTCTTTGGTCTTTGGTGGTTCTTGCCATTGAGAGGTACATCGTGGTTTGCAAGCCAATGGGAAGCTTCAAATTCTCCGCAAACCATGCGATGGCTGGCATTGCTTTCACATGGTTCATGGCCTGTAGCTGTGCAGTCCCCCCACTTTTTGGCTGGTCCAGATATCTTCCGGAAGGGATGCAAACCTCTTGCGGACCAGATTACTACACACTGAATCCTGAATATAACAATGAGTCTTACGTCATGTACATGTTCAGCTGCCACTTTTGCATACCCGTCACCACAATTTTCTTTACCTATGGCAGTCTGGTCTGCACAGTCAAGGCTGCTGCAGCTCAACAGCAGGAATCTGAGTCCACTCAGAAGGCTGAGAGGGAAGTGACACGCATGGTCATCCTGATGGTTTTGGGCTTCTTGTTTGCTTGGGTTCCCTATGCCAGCTTTGCTGCCTGGATCTTCTTTAACAGGGGAGCTGCTTTCTCCGCACAAGCCATGGCTGTTCCAGCCTTCTTCTCCAAGACTTCAGCTGTTTTTAACCCCATCATCTATGTGCTCCTAAACAAACAGTTCCGTAGCTGCATGCTTAACACCCTTTTCTGTGGCAAGAGTCCTCTTGGTGACGATGAGTCTTCCTCAGTGTCAACAAGCAAAACAGAGGTGTCCTCTGTGTCTCCTGCATAGATCTGCCTATTCAGTGCTCCGTCATTCAAATGAGACAAACTCACGGACATGCAGTACATCTTTGGCCATTTGCAACTGCTGTTTCTTTCAAGACCATACATGTCCACCTAAAAGCATTTTATCAGGAATTCAAGAATAGCCGATGGGTCTGAGGTTAAAGGAAAATGTTATGTTTATTGGATTTATGGAATCGTTTTCTTCACTGTTAGGTGGAGGCAATGGAAATGTATTCAATAAAGTACGCTTGAATTCATCTGGATCTATGCACAATATCTACTCCCGCACCAATAATTTCACTTCACTTGTATGTTTTGATGGaggtctttattttatttttttggtcattGTATTGTCTGCAAAAGCTGTCTGACTTGATCAGGTCAgattctgtaaatattttataaaaagtgtaggtagtatatttaaataaaagcatGCATTCCA

Function

symbol description
opn1mw1 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Located in photoreceptor outer segment. Is expressed in several structures, including endocrine system; heart; integument; photoreceptor cell; and visual system.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990604-42 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Located in photoreceptor outer segment. Is expressed in several structures, including endocrine system; heart; integument; photoreceptor cell; and visual system.

Ensembl:

ensembl_id ENSDARG00000097008

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062984 True 1574 mRNA 0.44 5 41181869 41183823

Neighbor

gene id symbol gene type direction distance location
XLOC_032247 slc6a22.2 coding upstream 20852 41144155 ~ 41161017 (+)
XLOC_032246 fkbp5 coding upstream 64627 41096058 ~ 41117242 (+)
XLOC_032245 NA coding upstream 98884 41080510 ~ 41082985 (+)
XLOC_032244 entpd8 coding upstream 121446 41038757 ~ 41060423 (+)
XLOC_032243 tgfa coding upstream 172488 40992409 ~ 41009381 (+)
XLOC_032249 opn1mw2 coding downstream 2497 41186320 ~ 41189460 (+)
XLOC_032250 opn1mw3 coding downstream 7659 41191482 ~ 41193419 (+)
XLOC_032251 AL732567.2 coding downstream 10864 41194687 ~ 41194801 (+)
XLOC_032252 opn1mw4 coding downstream 16677 41200500 ~ 41202554 (+)
XLOC_032253 cadpsb coding downstream 71662 41255485 ~ 41446053 (+)
XLOC_032242 NA non-coding upstream 195734 40984597 ~ 40986135 (+)
XLOC_032231 NA non-coding upstream 525823 40652905 ~ 40656046 (+)
XLOC_032225 NA non-coding upstream 629877 40545858 ~ 40551992 (+)
XLOC_032222 CU463231.2 non-coding upstream 700092 40475711 ~ 40481777 (+)
XLOC_032256 dre-let-7j non-coding downstream 270968 41454791 ~ 41454873 (+)
XLOC_032260 NA non-coding downstream 581815 41765638 ~ 41773554 (+)
XLOC_032261 NA non-coding downstream 595326 41779149 ~ 41788414 (+)
XLOC_032263 NA non-coding downstream 712561 41896384 ~ 41915013 (+)

Expression


Co-expression Network