G1328196


Basic Information

Item Value
gene id G1328196
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 78048870 ~ 78052823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1517183
ctcatatACAGAGAGACCATCGATCTGTCTCCTCATATAGAGAGAGAccatccatctgtctcctctaccctcatatACAGAGCGAccatccatctgtctcctctaccctcatatACAGAGAGGACATCCATCTGTCCCCTCATATATAGAGAGAGCATCCAtctgtctcctctaccctcatatACAGAGAGGACATCCAtctgtctcctctaccctcatatagagagagaccatccatctgtctcctctACCCCCATATACAGAGAGAccatccatctgtctcctctaccctcatatACAGAGAGACCATCCATCTGTCTACTCATATACAGAGAGGACATCCATCTGTCCCCTCATATATAGAGAGAccatccatctgtctcctctaccctcatatACAGAGAGACCATCCATCTGTCTCCTCATATACAGAGAGACCATCCATCTGTCTCCTCATATACAGAGAGACCATCCATCTGTCTCCTCATATACAGAGAGACCATCCATCTGCCTCCTCATATACAGAGAGACCATCCATCTGTCTCCTCATATACAGAGAGACAATCCAtctgtctcctctaccctcatatACAGAGAGGACATCCAtctgtctcctctaccctcatatACAGAGAGGACATCCAtctgtctcctctaccctcatatagagagagaccatccatctgtctcccctACCCCCATATACAGAGAGAccatccatctgtctcctctaccctcatatacagagagaccatccatctgtctcctcatatACAGAGAGGACATCCATCTGTCCCCTCATATATAGAGAGAccatccatctgtctcctctaccctcatatACAGAGAGACCATCCATCTGTCTACTCATATACAGAGAGgacatccatctctcccctcatatacagagagaccatccatctgtctcctcatatacagagagaccatccatctgtctcccctACCCTCATATAC
>TU1517184
ctcatatACAGAGAGACCATCGATCTGTCTCCTCATATAGAGAGAGAccatccatctgtctcctctaccctcatatACAGAGCGAccATCCAtctgtctcctctaccctcatatACAGAGAGGACATCCATCTGTCTCCTCATATACAGAGAccatccatctgtctcctctaccctcatatACTGAGAGAccatccatctgtctcctctaccctcatatACAGAGACCATACATCcgtctcctctaccc
>TU1517186
ctcatatACAGAGAGACCATCGATCTGTCTCCTCATATAGAGAGAGAccatccatctgtctcctctaccctcatatACAGAGCGAccatccatctgtctcctctaccctcatatACAGAGAGGACATCCATCTGTCCCCTCATATATAGAGAGAGCATCCAtctgtctcctctaccctcatatACAGAGAGGACATCCAtctgtctcctctaccctcatatagagagagaccatccatctgtctcctctACCCCCATATACAGAGAGAccatccatctgtctcctctaccctcatatACAGAGAGACCATCCATCTGTCTACTCATATACAGAGAGGACATCCATCTGTCCCCTCATATAGAGAGAGAccatccatctgtctcctctaccctcatatacagagagaccatccatctgtctcctcatatagagagagaccatccatctgtctcctctaccctcatatACAGAGCGAccATCCAtctgtctcctctaccctcatatACAGAGAGGACATCCATCTGTCTCCTCATATACAGAGAccatccatctgtctcctctaccctcatatACTGAGAGAccatccatctgtctcctctaccctcatatACAGAGACCATACATCcgtctcctctaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1517183 False 975 lncRNA 0.47 3 78048870 78050170
TU1517184 False 249 lncRNA 0.47 2 78048870 78052823
TU1517186 True 639 lncRNA 0.47 2 78048870 78052823

Neighbor

gene id symbol gene type direction distance location
LOC118938903 NA coding upstream 236226 77810841 ~ 77812644 (+)
LOC118938862 NA coding upstream 630664 77416342 ~ 77505819 (+)
LOC118938861 grip1 coding upstream 1578053 75732149 ~ 76472933 (+)
LOC118938860 NA coding upstream 2676807 75366958 ~ 75372063 (+)
LOC110499731 dyrk2 coding upstream 2682681 75332550 ~ 75366189 (+)
rergla LOC106609822 coding downstream 42708 78095531 ~ 78107017 (+)
il17r il17r coding downstream 70259 78123082 ~ 78148831 (+)
LOC118938866 LOC108426397 coding downstream 173051 78225874 ~ 78277603 (+)
LOC118938868 LOC106591072 coding downstream 418774 78471597 ~ 78516510 (+)
LOC110507939 LOC106592658 coding downstream 461598 78514421 ~ 78516253 (+)
G1328193 NA non-coding upstream 1545 78045636 ~ 78047325 (+)
G1328170 NA non-coding upstream 65495 77982838 ~ 77983375 (+)
G1328166 NA non-coding upstream 79523 77969069 ~ 77969347 (+)
G1328147 NA non-coding upstream 124926 77923719 ~ 77923944 (+)
G1328139 NA non-coding upstream 146246 77902388 ~ 77902624 (+)
G1328205 NA non-coding downstream 30315 78083138 ~ 78083460 (+)
G1328206 NA non-coding downstream 33202 78086025 ~ 78086271 (+)
G1328210 NA non-coding downstream 42268 78095091 ~ 78095295 (+)
G1328211 mkrn1 non-coding downstream 73611 78126434 ~ 78162526 (+)
G1328225 NA non-coding downstream 98204 78151027 ~ 78152928 (+)
LOC110490691 arhgef39 other upstream 31059 77958971 ~ 78066964 (+)
G1327379 NA other upstream 1235582 76809860 ~ 76813288 (+)
G1327230 NA other upstream 1458985 76587574 ~ 76589885 (+)
G1326605 NA other upstream 2163723 75884811 ~ 75885147 (+)
G1326586 NA other upstream 2242351 75805999 ~ 75806519 (+)
G1328201 NA other downstream 17206 78070029 ~ 78070403 (+)
LOC118936267 mrps33 other downstream 696555 78749330 ~ 78763988 (+)
LOC118938871 braf other downstream 727508 78780201 ~ 78826735 (+)
G1328968 NA other downstream 985781 79038604 ~ 79039457 (+)
G1329153 LOC106593057 other downstream 1565574 79618397 ~ 79621951 (+)

Expression


Co-expression Network