XLOC_003225 (diras1a)


Basic Information

Item Value
gene id XLOC_003225
gene name diras1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7324704 ~ 7341807 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006360
CGCGGGGGTGAGCCGCATATCGCGTGCTTGCGTGCGTCAGAGAGGACGTGGTAGGACAGCTGGAGCGCGCGCGCCCGCTCGCCTGAAGAGCAataacagcatttttttcagcGACATCGCTCGATTTACGCCATGCAAATAACACGCGAAAATGATACGGGTCTGGCACGGCAGAGAATGTAAGATATTCCTTGTGTATCGGATCTCCTAATGCTTCCTATAATTTATGACTAACAAGATTTGGGACGTTGCAACACAGTCGCCAGATCTCAGGGAATAACTGAGTCTTAAGCAGCAGATACTCCAGCAGATAAACCAGAGCAGCATGCCAGAGCAGAGTAACGATTACCGAGTGGTGGTCTTTGGAGCAGGGGGTGTAGGCAAGAGCTCCCTGGTTCTGCGCTTTGTTAAGGGCACCTTCAGGGACACCTACATCCCAACAGTGGAGGACACGTACCGGCAGGTCATCAGCTGCGACAAGAGCGTATGCACACTGGAGATCACCGACACCACCGGCAGCCACCAGTTCCCGGCTATGCAGCGTCTGTCCATCTCCAAGGGCCATGCCTTCATCCTGGTCTACTCCATCACCAGCAGGCAATCCCTGGAGGAGCTCAAGCCCATCTACCAGCAAGTGCTGGCCATCAAAGGCAACGTGGAGAACATCCCCATCATGCTTGTGGGTAACAAGAGCGATGAGACCCAGCGCGAGGTGGAGACCAAGGAGGGCGAGGCTCAGGCAAACACCTGGAAGTGCGCGTTCATGGAAACATCAGCCAAGACCAACACCAATGTGAAGGAGCTTTTTCAAGAGCTCCTGAATCTGGATAAGAAGCGGGATATGAGTCTGAACATGCGCTCCAGCAAGCAGAGACGGGCAGACAAGCTGAAGGCCAAGTGCAGTGTGATGTAGGAAGCCGCATCTATGGTCGCATCACTCAACTGACTCTTCGAAAATGTACATAAGTCCCTCACTTTAAAGGAAGAGTACGCCCTAAGATAATGGAACTCCTGTCATGATTTGTATGCTGCCGCTTTAAACCTACATgacttatttttcatttttcaagaatTATATTAGCTGTACTCCCATAAACGTTGTTCACAGGACCTGTCAAGTGTATTCCAAATCTCAAAATGGAAAGATCATAACCATATAACTAATTCAGAACGAGTTTGAGAGctgattctttaaaaaaaaaacgatgaaGTTCTTGTATTAACATACTACATTTACTTAAAGTGTAGGTACAGATTACAGTAATGTAACCTTCTGGCAGTTTTAGTCATGGACCACATACAGTACTGTGGTTGTTTAGCACCATAACCATTCTTATATTTCATTTTTGTGATTAACCGAAGAAAGCCATGTATGTTTAAGACGAGTAAACCATGACAGAACGTTCATTTTTGGGCTAACTCTCCCTTTAACTCTCCATTCCTCTCAGTCTTAATCAGGTAGTGTGCATCCAATCCGTCAACCGTCTCCCTTCCCCCCCCCTGTATGTTCTGGCTCCAGAAGTGACTCTGTGTATAAGACTATAAGAGCTGACACATGAAGCAGGGAGGACGTCCCACAATTCTCACACATGCTCTCTTCTCTACAGCTTTCTGTTGACTTTTTACTGAATTCAAGACAGACCAAACCATCAATGTGGCCATTTTTATGTCAGGCAGCTGTGTCTTTAATGGTACAGTGTCGAAACGCTGACGTCTTGAACCGGCTCTACACCGAATTGGATTCTCATCCGAGGAAGTGAACAGGCCCGGGTACAGCTTAAGAGGCGACGCTATCCGCTCTTCCAAATTACATACTACTATAGCAGCACAAAAGCCTACCACAAATCGGAAAACAATTTGGGACGGAGGACATTCTTAGTTAACTGGCTAGCCAGTGATGTAACCTGGTATAACAGAGTAAAGTGCATAATGCATGTCTGATGATATAAACTACCTTCATATTAAATGTGATTGAGATCTTTTCATCGAAAACAGAGCTATACCTTATTGAAGCACAGTGAATAAGTCTTAAATGTGATCATTTcgaaaagcatttttgttttggtgGCAGGGTGGGGGTTTGGGGTGTCGATTGGTGTTTTCTTTTACTCTGGTTTTTCAGGTGTTGATGGCACtcaaaaaccttaatatatgCATTTCATCATCTAACTGAAAACATATATCCTGTATGTGAAATCTGTGTGTATTATCAGCACTAATGAAAGCCCCTGTACAGCCCCTGTTTTTCTGTCGGTGTCTATGTTTCCTCTGATAATTTAATGCCATTTGCTTTAGCAATACACAATATAAAAGCACTTTTAGAATCTTGAGCACATTCAAAACACAGAGCGTAAACCTTTACGAAAATGTTCTTGTCAAACACTCTGCGTTTACAACTTGACtgcagataaagtgtttattcaataaatattatgTGAGGGACCAGAAAAATAAAGAAGCACAAACAAAAGGGAA

Function

symbol description
diras1a Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within neuron development and trigeminal ganglion development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in nervous system and otic vesicle. Orthologous to human DIRAS1 (DIRAS family GTPase 1).

GO:

id name namespace
GO:0061551 trigeminal ganglion development biological_process
GO:0048666 neuron development biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5788 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within neuron development and trigeminal ganglion development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in nervous system and otic vesicle. Orthologous to human DIRAS1 (DIRAS family GTPase 1).

Ensembl:

ensembl_id ENSDARG00000028066

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006360 True 2475 mRNA 0.44 2 7324704 7341807

Neighbor

gene id symbol gene type direction distance location
XLOC_003224 NA coding upstream 38394 7281239 ~ 7286310 (+)
XLOC_003223 si:ch73-238c9.1 coding upstream 44445 7276824 ~ 7280259 (+)
XLOC_003222 reep6 coding upstream 50326 7261981 ~ 7274378 (+)
XLOC_003221 nwd1 coding upstream 77717 7214353 ~ 7246987 (+)
XLOC_003220 thop1 coding upstream 112607 7183025 ~ 7212097 (+)
XLOC_003226 adgrl2a coding downstream 90726 7432533 ~ 7737642 (+)
XLOC_003227 CR450813.2 coding downstream 440707 7782514 ~ 7783314 (+)
XLOC_003228 NA coding downstream 483546 7825353 ~ 7826072 (+)
XLOC_003229 NA coding downstream 538335 7880142 ~ 7971030 (+)
XLOC_003230 prkacba coding downstream 787729 8129536 ~ 8150894 (+)
XLOC_003250 BX324177.11 misc downstream 4003996 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 4031079 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 4044555 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 4076226 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 4087586 11429393 ~ 11429689 (+)
XLOC_003217 NA non-coding upstream 172697 7149071 ~ 7152007 (+)
XLOC_003218 CU929070.2 non-coding upstream 173798 7150820 ~ 7150906 (+)
XLOC_003216 CR925817.1 non-coding upstream 221168 7095176 ~ 7103536 (+)
XLOC_003215 FQ976909.1 non-coding upstream 368325 6946591 ~ 6956379 (+)
XLOC_003234 CR847563.1 non-coding downstream 1236247 8578054 ~ 8580557 (+)
XLOC_003235 NA non-coding downstream 1334162 8675969 ~ 8677720 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G247592 NA unknown CI01000058 null 646443 ~ 654949 (-)
eurasian perch (Perca fluviatilis) G202714 diras1,LOC103373792,LOC100707435,LOC101171042,LOC104949211,LOC107392100 non-coding NC_053131.1 CM020928.1 14033712 ~ 14051258 (-)