XLOC_032252 (opn1mw4)


Basic Information

Item Value
gene id XLOC_032252
gene name opn1mw4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41200500 ~ 41202554 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062988
AGGTGAAGTGCAGATATCTGTAGTACAGAAGCAGGTTACATCTTTTCATCCATCTGGATCTTTAGCAGGTAGAGATGAACGGCACTGAAGGAAACAACTTCTACATCCCCCTGTCCAACAGGACAGGGCTAGCAAGGAGTCCGTATGAATATCCTCAGTATTATCTTGCGGAGCCATGGCAGTTTAAACTGCTCGCCGTCTACATGTTCTTCCTCATCTGCTTAGGTTTCCCCATCAATGGCCTTACATTGTTGGTAACAGCTCAACACAAAAAGCTGAGGCAACCTCTCAACTTCATTCTGGTCAATCTGGCTGTGGCAGGCACCATCATGGTTTGTTTTGGATTCACGGTCACTTTCTACACAGCCATTAATGGATACTTTGTTCTGGGACCAACTGGCTGTGCGATTGAGGGATTCATGGCCACACTGGGAGGCGAAGTTGCCCTTTGGTCACTTGTAGTGCTGGCCGTTGAGAGATACATTGTGGTTTGCAAGCCAATGGGGAGTTTCAAATTTTCTGCCAGTCACGCTTTCGCAGGATGCGCATTCACATGGGTAATGGCCATGGCTTGTGCAGCTCCCCCTCTGGTTGGTTGGTCCAGGTATATTCCGGAGGGAATGCAGTGTTCATGTGGACCAGACTACTACACCCTGAACCCAGAGTACAACAACGAATCATATGTCCTCTACATGTTCATCTGTCATTTTATACTTCCAGTTACTATAATCTTCTTCACCTATGGGCGACTTGTTTGCACAGTCAAAGCGgCTGCAGCTCAACAGCAGGAATCAGAATCCACTCAGAAGGCTGAGAGAGAAGTGACCAGAATGGTCATCCTGATGGTTCTGGGCTTCCTGATTGCTTGGACTCCTTATGCTACTGTTGCTGCCTGGATCTTCTTTAATAAGGGAGCTGCTTTCAGTGCTCAGTTCATGGCTGTTCCTGCCTTTTTCTCAAAGACCTCTGCATTGTATAACCCTGTCATCTATGTGCTGCTAAATAAACAGTTTCGTAATTGCATGCTGACCACTCTATTCTGTGGAAAGAATCCTCTTGGCGATGATGAATCCTCTACTGTGTCCACCAGCAAGACGGAGGTGTCTTCTGTATCTCCAGCATAGTCTTTTGAACTTCTTTACAGGTTATGTTCTTTTAGTTACTGAGAAATCTGggcatctgaaaaaaaaaacaaaaaaaaaaaacaaaacaaaacaaaagttcctggctgtgttctgtcatcattaacttgGTCAACGTTGTTATATTTTCTACACGCCAGAGGGCTAGCATTTATATATTTTGGttgaaatgtactgtatatatattttgtaaataatgaaaaagaTATACATAGAAATAAATACCggcattaaaaa

Function

symbol description
opn1mw4 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; gut; heart; integument; and visual system.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990604-43 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; gut; heart; integument; and visual system.

Ensembl:

ensembl_id ENSDARG00000000638

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062988 True 1379 mRNA 0.44 5 41200500 41202554

Neighbor

gene id symbol gene type direction distance location
XLOC_032251 AL732567.2 coding upstream 5699 41194687 ~ 41194801 (+)
XLOC_032250 opn1mw3 coding upstream 7081 41191482 ~ 41193419 (+)
XLOC_032249 opn1mw2 coding upstream 11040 41186320 ~ 41189460 (+)
XLOC_032248 opn1mw1 coding upstream 16677 41181869 ~ 41183823 (+)
XLOC_032247 slc6a22.2 coding upstream 39483 41144155 ~ 41161017 (+)
XLOC_032253 cadpsb coding downstream 52931 41255485 ~ 41446053 (+)
XLOC_032254 cplane2 coding downstream 243987 41446541 ~ 41451844 (+)
XLOC_032255 wdr82 coding downstream 250425 41452979 ~ 41461390 (+)
XLOC_032256 dre-let-7j coding downstream 252237 41454791 ~ 41454873 (+)
XLOC_032257 twf2a coding downstream 261231 41463785 ~ 41501766 (+)
XLOC_032245 NA non-coding upstream 117515 41080510 ~ 41082985 (+)
XLOC_032242 NA non-coding upstream 214365 40984597 ~ 40986135 (+)
XLOC_032231 NA non-coding upstream 544454 40652905 ~ 40656046 (+)
XLOC_032225 NA non-coding upstream 648508 40545858 ~ 40551992 (+)
XLOC_032260 NA non-coding downstream 563084 41765638 ~ 41773554 (+)
XLOC_032261 NA non-coding downstream 576595 41779149 ~ 41788414 (+)
XLOC_032263 NA non-coding downstream 693830 41896384 ~ 41915013 (+)
XLOC_032265 BX664752.1 non-coding downstream 795409 41997963 ~ 41998096 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_10103264_10104931 OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 coding CI01000340 null 10102271 ~ 10105194 (+)