XLOC_032254 (cplane2)


Basic Information

Item Value
gene id XLOC_032254
gene name cplane2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41446541 ~ 41451844 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062991
TTTTGATGTTCAAATCAGATGGCTTCACGTTCGCGAATAGAAAGTTACTTGATATCACACAATACAGTGCACAATATCTTTCTGCACTTGTGTTAAATTAAAATGTCTGTCCCACCTGGATCCATTATCGTGTCAGACTGGCACCGCTGTCCTGATAGCAGAGAGTTTTTCAGCAAAATACTGCACAAGAAGAGACGGCGAAAGTTTGGGCTCTTAGAGGCGCCAATGATGCCTCCTCAGATGAATGTGGACCTCGTTCGCTACAAGGTGTTTCTCTCAGGTAAAACTGGAGTGGGGAAGAGCGCGCTTGCTGCCCGTCTCGCTGGACTCGACCTGCCCAAAATGCACTACGAGACCACAGGCATAGAAACAACTGTGGTCTTCTGGCCTGTCAGACTAAAGGAAAGTGGCCGTGTGTTGTTTTTCCGCTTCGAGCTTTGGGACTGTGGTGAAAGTGCCATGCGTAGATTTGACCACATGTTGCTGTCCTGTAAGGAAAAGGTGGATGCCATCCTTTTCCTGTTCTCCTTTACTGACCGTGGCTCCTTTGACGAACTTACCAACCAAATATCACGGATCACAGAACCTTCAGATCGTGTGGTTAAATTGGTGGTTGGCACAAAgtttgatttatttatgcacACAGACGTGACGGAGAGCGACGTGACACATTTTCAGGAGGTGTGGGGTCTTCCGGTTTTCCGTGTGGGAGGTGATGTGAGTGCTGGGCTTGGTGAGGTAGCACCTCTGCTAAATGCCCTTGTGGAAAACTTGTGGCACCAGGATTGTATGGCCGCTTCATCTGTCTCCATCTCTCCACAGGCTGCTCTCAGAGAAACAAGCTCAGAAATCATTGTATAGACCCAAATTGAGTGATGTTAACCATAACAATGGTCCCGATGTGTTTCCTGGTACATTGTTACATTTCCATAGCTTTTGAAAGTCAAAAAGTTccacatattattaaatattgttgcAATAGCTGTTATAACATCGAGTTATGATTGAATCTCCTCTTTTTAcagatatgaaatagtttgacaacaagcaagaAGTATTCATGGCATAGTGACATCACCACACTGAAATGGCCTATAACTCCTACTCTAATATGACTAAATGTGTATGTGTAATATGCTGCTATATatggaaataaatgtttttttagtttttacatgtttattagacattttagtagtgttaagtgcaaatattttaaacagtgaccaaaaataaaaatgacatctcAATAAATGAATGTGCTTGTAATTTCAGGATAGTCACagatttatgtgtatatattcagaaagtcaaaaataaaaatctgtgctAAAGTATAAAA
>TCONS_00062992
TCAAATCAGATGGCTTCACGTTCGCGAATAGAAAGTTACTTGATATCACACAATACAGTGCACAATATCTTTCTGCACTTGTGTTAAATTAAAATGTCTGTCCCACCTGGATCCATTATCGTGTCAGACTGGCACCGCTGTCCTGATAGCAGAGAGTTTTTCAGCAAAATACTGCACAAGAAGAGACGGCGAAAGTTTGGTAAAACTGGAGTGGGGAAGAGCGCGCTTGCTGCCCGTCTCGCTGGACTCGACCTGCCCAAAATGCACTACGAGACCACAGGCATAGAAACAACTGTGGTCTTCTGGCCTGTCAGACTAAAGGAAAGTGGCCGTGTGTTGTTTTTCCGCTTCGAGCTTTGGGACTGTGGTGAAAGTGCCATGCGTAGATTTGACCACATGTTGCTGTCCTGTAAGGAAAAGGTGGATGCCATCCTTTTCCTGTTCTCCTTTACTGACCGTGGCTCCTTTGACGAACTTACCAACCAAATATCACGGATCACAGAACCTTCAGATCGTGTGGTTAAATTGGTGGTTGGCACAAAACGTGACGGAGAGCGACGTGACACATTTTCAGGAGGTGTGGGGTCTTCCGGTTTTCCGTGTGGGAGGTGATGTGAGTGCTGGGCTTGGTGAGGTAGCACCTCTGCTAAATGCCCTTGTGGAAAACTTGTGGCACCAGGATTGTATGGCCGCTTCATCTGTCTCCATCTCTCCACAGGCTGCTCTCAGAGAAACAAGCTCAGAAATCATTGTATAGACCCAAATTGAGTGATGTTAACCATAACAATGGTCCCGATGTGTTTCCTGGTACATTGTTACATTTCCATAGCTTTTGAAAGTCAAAAAGTTccacatattattaaatattgttgcAATAGCTGTTATAA
>TCONS_00062993
GTGCACAATATCTTTCTGCACTTGTGTTAAATTAAAATGTCTGTCCCACCTGGATCCATTATCGTGTCAGACTGGCACCGCTGTCCTGATAGCAGAGAGTTTTTCAGCAAAATACTGCACAAGAAGAGACGGCGAAAGTTTGGGCTCTTAGAGGCGCCAATGATGCCTCCTCAGATGAATGTGGACCTCGTTCGCTACAAGGTGTTTCTCTCAGGTAAAACTGGAGTGGGGAAGAGCGCGCTTGCTGCCCGTCTCGCTGGACTCGACCTGCCCAAAATGCACTACGAGACCACAGACGTGACGGAGAGCGACGTGACACATTTTCAGGAGGTGTGGGGTCTTCCGGTTTTCCGTGTGGGAGGTGATGTGAGTGCTGGGCTTGGTGAGGTAGCACCTCTGCTAAATGCCCTTGTGGAAAACTTGTGGCACCAGGATTGTATGGCCGCTTCATCTGTC

Function

symbol description
cplane2 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in cellular protein localization; cilium assembly; and regulation of vesicle-mediated transport. Predicted to act upstream of or within cell projection organization; exocytosis; and protein transport. Predicted to be located in ciliary basal body. Orthologous to human CPLANE2 (ciliogenesis and planar polarity effector 2).

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0031338 regulation of vesicle fusion biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0015031 protein transport biological_process
GO:0034613 cellular protein localization biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040912-80 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in cellular protein localization; cilium assembly; and regulation of vesicle-mediated transport. Predicted to act upstream of or within cell projection organization; exocytosis; and protein transport. Predicted to be located in ciliary basal body. Orthologous to human CPLANE2 (ciliogenesis and planar polarity effector 2).

Ensembl:

ensembl_id ENSDARG00000028442

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062991 False 1342 mRNA 0.41 5 41446541 41451844
TCONS_00062992 False 887 mRNA 0.46 5 41446550 41451493
TCONS_00062993 True 456 mRNA 0.52 3 41446607 41451309

Neighbor

gene id symbol gene type direction distance location
XLOC_032253 cadpsb coding upstream 488 41255485 ~ 41446053 (+)
XLOC_032252 opn1mw4 coding upstream 243987 41200500 ~ 41202554 (+)
XLOC_032251 AL732567.2 coding upstream 251740 41194687 ~ 41194801 (+)
XLOC_032250 opn1mw3 coding upstream 253122 41191482 ~ 41193419 (+)
XLOC_032249 opn1mw2 coding upstream 257081 41186320 ~ 41189460 (+)
XLOC_032255 wdr82 coding downstream 1135 41452979 ~ 41461390 (+)
XLOC_032256 dre-let-7j coding downstream 2947 41454791 ~ 41454873 (+)
XLOC_032257 twf2a coding downstream 11941 41463785 ~ 41501766 (+)
XLOC_032258 cish coding downstream 52010 41503854 ~ 41506749 (+)
XLOC_032259 srgap3 coding downstream 102950 41554794 ~ 41757181 (+)
XLOC_032245 NA non-coding upstream 363556 41080510 ~ 41082985 (+)
XLOC_032242 NA non-coding upstream 460406 40984597 ~ 40986135 (+)
XLOC_032231 NA non-coding upstream 790495 40652905 ~ 40656046 (+)
XLOC_032225 NA non-coding upstream 894549 40545858 ~ 40551992 (+)
XLOC_032260 NA non-coding downstream 313794 41765638 ~ 41773554 (+)
XLOC_032261 NA non-coding downstream 327305 41779149 ~ 41788414 (+)
XLOC_032263 NA non-coding downstream 444540 41896384 ~ 41915013 (+)
XLOC_032265 BX664752.1 non-coding downstream 546119 41997963 ~ 41998096 (+)

Expression


Co-expression Network