XLOC_032255 (wdr82)


Basic Information

Item Value
gene id XLOC_032255
gene name wdr82
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41452979 ~ 41461390 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062994
AAATCGTAATGGGACTTTTATTCTGAAAACATTCGCAGGGGTGGTGGCCATTTTGTAAGTCACCTTGCTAGTTCTAGCTTCATCTCGTCTTCCGTAATCCAGTTCATTGACCAGTTCTGTCGGCGGGCTTTTTTAATGTGACAGAAATACACATCTGAAAACCATTTTCGGTCAACAAAATTTTCACGACACACTCGCAACGCACAAGACTGTTTAACCAGAACCCAAACTTGTCGCTGTTTTAACGAAACGATCCCGTCGCGCCTGGCCAGGCAAGAAAGGCCACAATGAAGCTCACAGACAGTGTGCTGAGGAGTTTCAGGGTTGCGAAGGTTTTCCGAGAGAACTCCGACAAAATAAACTGCTTTGACTTCAGTTCAAATGGAGAAACTGTAATATCGAGTAGCGACGATGACTCGATTGTCTTGTACGACTGCCAGGAAGGAAAACCCAAACGGACGCTTTACAGTAAGAAGTATGGTGTGGATCTCATCAGATACACCCATGCAGCCAACACAGTCGTCTACAGCTCTAACAAGATTGACGATACTATACGATACCTGTCTCTACATGACAATAAGTACATTCGCTACTTTCCTGGACACAATAAAAGGGTTGTCGCCCTGTCTATGTCCCCTGTTGATGACACATTCATTTCTGGCTCCCTTGACAAAACCATTCGTCTGTGGGACCTTCGCTCGCCTAACTGTCAAGGCCTCATGCACCTGCAAGGGAAACCTGTGTGCTCATTTGATCCCGAGGGGTTGATTTTTGCTGCAGGAGTGAATTCTGAGATGGTCAAACTTTATGATTTGCGCTCTTTTGATAAGGGCCCATTTGCCACATTTAAACTGCAATATGAGCGGACGTGTGAGTGGACGGGTCTCAAGTTCAGCAATGATGGAAAGCTCATTCTGGTCTCCACCAATGGAGGAACACTCAGAGTGCTGGATGCTTTTAAAGGAGCTGTTCTCCACTCGTTTGggGGTTATAACAACAGTAAAGGTGTCATTTTGGAGGCTTCTTTCACACCAGACTCTCAGTTCATTATGATCGGATCAGAAGATGGGAAGATCCATGTGTGGAATGCTGAGAGTGGGATGAAAGTAGCGCTTCTGGATGGGAAACACACTGGTCCTGTTACCTGTCTACAGTTTAACCCCAAATTCATGACCTTTGCCAGTGCCTGTTCTAACATGGCGTTCTGGTTACCCACCATTGATGATTGATGGGCAGCTGTCATCAGTCGGCCTGTGATGTTCTTCCAGCAGGTGGCGTCATTCACCCTTCTCTTGGCACACATGAAGATGTTCACCGTGGGAATTTTGGACTGTAAATAGATTTGGCTTGATGCcgagttgtattattattaattttttttttcattttatatttgtatgattaaaaagtttttgtaaaacATTAAGTGATCTGTTCACACATTCTGTTTTGTTTGAGGTTGTAACAGTGCTTCAATGAAACTGAGGTGATGTAAAACATCCAGCAGAATTGATCTTAGCTCTCCAAACTATACCAGAAGTCAGCACCTGTAGATTTAGCATCTTATGCGatctaaaaaaaatgtcaatggccctttttttttttttaataaacatgtttataCAACTTTCCAAAGATTTGGTTTTGAGGCCTTTCAGACATGTAATGCTTCTAGCTGTTGTGTGTAGTCCAGTATAATTGTGTCTGAGGGGAACTGCTTTTATACCATTATTTTACCTGTTTCTGTTGCATTTCTTTGTAATATCAGCATTGTAAATTgcttataaaacaaattttataatCAGTATACACTGACCACCCTCTCTGAAGCGTCATCTTGTTTTGTAACTTACTTTGCACTAACGaaacaacacattttatttatatgaGTTGTAGCTTTGTTGTcactgtaatttgttttattttttaatccaaataggttttctttttttcaggTTAGCCTCACACATTACACCTTTTCTTATTTAAAAGTTGAAATAATCCTTTCTTGGAAACTTTTTATTTCATGTACAAAACTTGTCACTTGCACAGACTTTCAGTGTTCAACATAAATTtatcatcatttaattttaagaTTTGTAACTGAGAATACACACAAAGAAAGATAAACCGATTAGTTTTCTGCCcaaataaaattatttctaaaagtgTGCATTAAAGAACCAGCTGTGTCAGTCAA

Function

symbol description
wdr82 Predicted to enable chromatin binding activity. Predicted to be involved in histone H3-K4 trimethylation. Predicted to be located in nucleus. Predicted to be part of Set1C/COMPASS complex. Orthologous to human WDR82 (WD repeat domain 82).

GO:

id name namespace
GO:0080182 histone H3-K4 trimethylation biological_process
GO:0030837 negative regulation of actin filament polymerization biological_process
GO:0048188 Set1C/COMPASS complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042800 histone methyltransferase activity (H3-K4 specific) molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03015 mRNA surveillance pathway
ko03019 Messenger RNA biogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-333 Predicted to enable chromatin binding activity. Predicted to be involved in histone H3-K4 trimethylation. Predicted to be located in nucleus. Predicted to be part of Set1C/COMPASS complex. Orthologous to human WDR82 (WD repeat domain 82).

Ensembl:

ensembl_id ENSDARG00000014083

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062994 True 2200 mRNA 0.40 9 41452979 41461390

Neighbor

gene id symbol gene type direction distance location
XLOC_032254 cplane2 coding upstream 1135 41446541 ~ 41451844 (+)
XLOC_032253 cadpsb coding upstream 6926 41255485 ~ 41446053 (+)
XLOC_032252 opn1mw4 coding upstream 250425 41200500 ~ 41202554 (+)
XLOC_032251 AL732567.2 coding upstream 258178 41194687 ~ 41194801 (+)
XLOC_032250 opn1mw3 coding upstream 259560 41191482 ~ 41193419 (+)
XLOC_032257 twf2a coding downstream 2395 41463785 ~ 41501766 (+)
XLOC_032258 cish coding downstream 42464 41503854 ~ 41506749 (+)
XLOC_032259 srgap3 coding downstream 93404 41554794 ~ 41757181 (+)
XLOC_032260 NA coding downstream 304248 41765638 ~ 41773554 (+)
XLOC_032261 NA coding downstream 317759 41779149 ~ 41788414 (+)
XLOC_032245 NA non-coding upstream 369994 41080510 ~ 41082985 (+)
XLOC_032242 NA non-coding upstream 466844 40984597 ~ 40986135 (+)
XLOC_032231 NA non-coding upstream 796933 40652905 ~ 40656046 (+)
XLOC_032225 NA non-coding upstream 900987 40545858 ~ 40551992 (+)
XLOC_032263 NA non-coding downstream 434994 41896384 ~ 41915013 (+)
XLOC_032265 BX664752.1 non-coding downstream 536573 41997963 ~ 41998096 (+)
XLOC_032266 CU694444.1 non-coding downstream 701260 42162650 ~ 42162774 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_10227896_10249819 TWF2, WDR82P1, WDR82.L, WDR82.S, WDR82, SWD2 coding CI01000340 null 10227896 ~ 10250768 (+)
bowfin (Amia calva) AMCG00017371 wdr82,swd2,LOC107712117,LOC106565976,LOC107584451,LOC107673495 coding CM030122.1 CM030122.1 54856826 ~ 54863910 (+)