G1328822


Basic Information

Item Value
gene id G1328822
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 78787014 ~ 78841501 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1518155
GCCTTATATATGATGCAGTGGTACACCTGGGGTGTTGATTAAAGTCAAAAAACAAAAACCCACGTGGCAACagtatccatattaggacagcctcggTCAGACTTCCCTCAGTCTCAGATAACAGACAGAAACCACAGAAATATACACACTGACTTATTCACAGGCCAAGTTTAGGAAACTCTGCCGATAGAGGACAGGCAGAGTGCCATTAGAGAGGCAGTCAGTCTTTCCACGCCGTGACTCCAATTATAAGTCTAAACCCAgctctattccctgtatagtgcactactttagaccagagccctattccctacatagtgcactactttagaccagagccctattccctacatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctattccttatatagtgcactactatagaccagagccctattctctatatagtacactactttagaccagagccctattccctatatagtacactactttagaccagagccctattccctatatagtacactactttagaccagaaccctattccctatatagtgcactactttagaccagagccctattccctatatagtacactactttaaaccagagccctattccctatatagtgcactactttagaccagggccctattccctatatagtgcactactttagaccagagccctatttcctatatagtgcactactttagaccagagccctatttcctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctattccctatatagtacactactatagaccagagccctatttcctatatagtacactactatagaccagagccctattccctatatagtacactactatagaccagagccctattctctatatagtgcactactttaaaccagagccctattccctatatagtacactactttagaccagagccctattgcctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagtcctattccctatatagtaca
>TU1518156
cctatatagtgcactactttagaccagaaccctattccctatatagtgcactactttagaccagggccctattccctatatagtgcactactttagaccagagccctattccctatatagtacactactttaaaccagagccctattccctatatagtgcactactttagaccagggccctattccctatatagtgcactactttagaccagagccctatttcctatatagtgcactactttagaccagagccctatttcctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctattccctatatagtacactactatagaccagagccctatttcctatatagtacactactatagaccagagccctattccctatatagtacactactatagaccagagccctattctctatatagtgcactactttaaaccagagccctattccctatatagtacactactttagaccagagccctattgcctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagtcctattccctatatagtaca
>TU1518158
cctatatagtgcactactttagaccagaaccctattccctatatagtgcactactttagaccagggccctattccctatatagtgcactactttagaccagagccctattccctatatagtacactactttaaaccagagccctattccctatatagtgcactactttagaccagggccctattccctatatagtgcactactttagaccagagccctatttcctatatagtgcactactttagaccagagccctatttcctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctattccctatatagtacactactatagaccagagccctatttcctatatagtgcactactttagaccagagccctatttcctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctattttagaccagagccctattccctatatagtgcactactttagaccagagtcctattccctatatagtaca

Function

NR:

description
PREDICTED: uncharacterized protein LOC106562210, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1518155 False 1099 lncRNA 0.42 4 78787014 78841501
TU1518156 False 605 lncRNA 0.41 2 78787014 78787803
TU1518158 True 549 lncRNA 0.42 2 78787014 78787803

Neighbor

gene id symbol gene type direction distance location
LOC118936340 LOC106592244 coding downstream 91233 78677394 ~ 78695781 (-)
LOC118938904 LOC106592658 coding downstream 147240 78637911 ~ 78639774 (-)
LOC118938870 LOC106592244 coding downstream 163537 78599589 ~ 78623477 (-)
LOC118938869 NA coding downstream 212692 78573540 ~ 78574322 (-)
LOC118938867 LOC106576670 coding downstream 334510 78298576 ~ 78452504 (-)
LOC118938905 NA coding upstream 37239 78878740 ~ 78918133 (-)
LOC118938873 LOC106590959 coding upstream 465679 79307180 ~ 79340005 (-)
LOC110536863 LOC105029310 coding upstream 645502 79487003 ~ 79489128 (-)
LOC118938874 NA coding upstream 768045 79609180 ~ 79612871 (-)
LOC110513674 LOC106593057 coding upstream 777001 79618502 ~ 79623426 (-)
G1328815 NA non-coding downstream 22957 78763099 ~ 78766048 (-)
G1328738 NA non-coding downstream 47882 78734346 ~ 78739132 (-)
G1328751 NA non-coding downstream 54302 78732275 ~ 78732712 (-)
G1328743 NA non-coding downstream 71006 78712833 ~ 78716008 (-)
G1328723 NA non-coding downstream 78923 78669486 ~ 78708091 (-)
G1328853 NA non-coding upstream 13649 78855150 ~ 78856880 (-)
G1328859 NA non-coding upstream 24207 78865708 ~ 78866281 (-)
G1328867 NA non-coding upstream 38526 78880027 ~ 78881109 (-)
G1328875 NA non-coding upstream 56630 78898131 ~ 78898408 (-)
G1328880 NA non-coding upstream 61844 78903345 ~ 78903567 (-)
G1328123 NA other downstream 912410 77871279 ~ 77874604 (-)
LOC110515635 LOC106576658 other downstream 1280240 77418263 ~ 77506802 (-)
G1326996 NA other downstream 2788014 75998506 ~ 75999000 (-)
G1328861 NA other upstream 28824 78870325 ~ 78871031 (-)
G1328892 NA other upstream 84413 78925914 ~ 78926137 (-)
G1328987 NA other upstream 188166 79029667 ~ 79030956 (-)
G1329004 NA other upstream 233789 79075290 ~ 79075536 (-)
G1329475 NA other upstream 701293 79542794 ~ 79543153 (-)

Expression


Co-expression Network