XLOC_032257 (twf2a)


Basic Information

Item Value
gene id XLOC_032257
gene name twf2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41463785 ~ 41501766 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062996
CCCTCTCGCTTGGATAGCTCACAGTCTGTCAAACACCAGACTCTTACTTCATTCTGCTGCTTTCACACCGCTGTGTTTCTGATAGGTTAACGCACTGACCACTGCTTGAAGAGAGTTTGTAAAAAGAAGATCCTCCAGGTGACCTGACCTGAGCATCCAGCTTCATCCAACTTCAGAAGGTTTCTTGGCGGGTGGGAAGGCACCACACTGACCCGCCATGTTTCTGGTTCTGGTGGTTACAGAGGAGCTGAGGGAGTTTCTGGCCCGGGCACGAAACGGAACCGGCCGCCTCATCCAGGTGTTGATCAGAGACGAGCAGCTGGTGCTGGGGGCGTACAGAGAACCCCGTCACAGTTGGGACAAAGACTACGACCCAGTCCTACTCCCCCTGCTGGACCCGCTCGAGCCCTGCTATATCTTATACCGGCTGGACTCCAAAAACGCACAAGGCTATGAGTGGCTCTTCATCTCCTGGTCTCCGGACCAGTCGCCTGTCCGACAGAAGATGCTTTACGCTGCCACTCGCGCCACAGTGAAGAAAGAGTTTGGTGGTGGACACGTCAAAGATGAGATGTTTGGCACAGTTGAGGAGGACATCTGTCTCCAGGGGTATCTGCGACACATCACTTCATGCTCAGCACCAGCGCCTCTGACAGTGGCTGAACAGGAGCTTCAGAGAATCAAAATCACAGAGGGCAGAGTTAAACAGGTGAGTCCTGTATCAGTGTGGACCCCAAACATCAGACTCTACAGGGTCTTGCTTTTCCATTACAGGCTGAAGCCAAACGTGCTTTAAAGCAGCTCGCAGAGAGACGCATCAACTACATTCAACTG
>TCONS_00062997
CCTCTCGCTTGGATAGCTCACAGTCTGTCAAACACCAGACTCTTACTTCATTCTGCTGCTTTCACACCGCTGTGTTTCTGATAGGTTAACGCACTGACCACTGCTTGAAGAGAGTTTGTAAAAAGAAGATCCTCCAGGTGACCTGACCTGAGCATCCAGCTTCATCCAACTTCAGAAGGTTTCTTGGCGGGTGGGAAGGCACCACACTGACCCGCCATGTTTCTGGTTCTGGTGGTTACAGAGGAGCTGAGGGAGTTTCTGGCCCGGGCACGAAACGGAACCGGCCGCCTCATCCAGGTGTTGATCAGAGACGAGCAGCTGGTGCTGGGGGCGTACAGAGAACCCCGTCACAGTTGGGACAAAGACTACGACCCAGTCCTACTCCCCCTGCTGGACCCGCTCGAGCCCTGCTATATCTTATACCGGCTGGACTCCAAAAACGCACAAGGCTATGAGTGGCTCTTCATCTCCTGGTCTCCGGACCAGTCGCCTGTCCGACAGAAGATGCTTTACGCTGCCACTCGCGCCACAGTGAAGAAAGAGTTTGGTGGTGGACACGTCAAAGATGAGATGTTTGGCACAGTTGAGGAGGACATCTGTCTCCAGGGGTATCTGCGACACATCACTTCATGCTCAGCACCAGCGCCTCTGACAGTGGCTGAACAGGAGCTTCAGAGAATCAAAATCACAGAGGTGAAGGCTGAGATCAGTGTGGACCCCAAACATCAGACTCTACAGGGTCTTGCTTTTCCATTACAGGCTGAAGCCAAACGTGCTTTAAAGCAGCTCGCAGAGAGACGCATCAACTACATTCAACTGAAGTTAGACACAGAGAAGGAAACCATTGACTTGGTGCACACCAGTCCAACAGACATCCGCGACCTGCCGTGTCGGATTCCTCTGGATACACCCAGATATCACTTCTTCCTCTACAAACACTCACATGAGGGGGATTACCTCGAGTCTGTTGTGTTCATATACTCTATGCCAGGCTACAGCTGCAGCATCAAAGAGAGGATGCTCTATTCCAGCTGCAAGAGTCGACTTCTGGATGAAGTAGAGAGAGATTTTCATCTTGAGGTGGCTAAGAAGCTGGAGATTGACAGTGGAGAGGAGCTGACAGAGGAATATCTGTATGATGAGGTCCATCCTAAACAACATGCCCACAAGCAAGCGTTCGCCAAGCCTCGCGGGCCTGCTGGAAAAAGAGGAAACAAGCGTCTGATCAAAGGTGGAGGAGAGAACGGCGGAAACAGCTAGAATGAAcacaagagagaaagagagatacgAACTTCAGTTGCTCCATGAACGTCCCACAGGTCCCTTTTTTCCACCCGTCTGCAGGTCATCTGTTCATCCTGCACGcggagagaaagaaaaataacaataCTGTGCTCAGTTGTTTTTGTTTCTACTTTCTTTGGCTTGTATTTTCATTCAGTCTGTGTTACAGTAATGTGCATATAACAGCACCCTCCGCTAATATCGGCACCCTTGGTAAATATATCATTTAGCCTTTtgctcaaaatattaataaaaatagtgaAGACGATTTAGTTTTCAATTGTTTGTTCTCAGTGAGAGCAGAATTGTTCATATTTTGCACAAAAGTTTAAAAGGTAACACAATAAAGTTATCTTTTCATAGGCTTTTTTTGCTCATGTTTACCAGGAGAGCCAGTATTAGTGGGGGGCAGTGTATTTAGGAGACGAACTCAGGAAATTATTTTTTCTGTGTACATTTTAAGAGCATATTTTTATGTCATTTCGAACGTACTTGCAGACACACTCCAAACTCTCAGCATATAAAAAAAGGATTTGTGTTTATTAGCTTGCTCATGCCTTAAATGTGTCTTTCAAAGAAGTTTGTCCACCTTTTTAAACCCCAAAGTCCAAGAACCTGCTGCAGATTCATAGAAAACGACTCAACCATATTCACACACTTTCAGCCAAACCAAATGTGACACGTAGTCAGAATATTATACTCGGCTACGTGAGAGTCACTCAGTTTGTTCAGTAACAGATATGTCGCAATGATTGGATGTGTTAAAATATGCAGATTTAGACATagatttctgatttattttagaatttatgcGTTGTATTTTCGGGTCAAAGATGAAAAAgtcattttatatacagttgaagtcagaagtattaatcctcctgaattattagaacccgtttattttttccacagtttgtgtttaacagagagaatattttttccacacatttctaaacataatagttttaataactcatctctaagaactgatttattttattttttgccattatgacactacataatatttgactagatatttttcaagacacttctatacagcttaaagtgacatttaaaggcttaactagggtaattaggttaactaggctggttagggtatttaggcaagttattgcataataatggtttgttcagtatactatcgaaaaaaaatattgcttaaagggactaataattttgtccttaaaatggcttttaaaaaaaataaaaactgcttttgttctagccaaaataaaacaaataagactttctcccaaagaaaaaaaaaattatcagacattctgtgaaaatttcctttctctgttaaacataatttgtgaaatatttaaaaagaaaaaaa

Function

symbol description
twf2a Predicted to be located in perinuclear region of cytoplasm. Is expressed in lateral line ganglion; myotome; pectoral fin musculature; pharyngeal arch; and somite.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094792

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062996 False 834 processed_transcript 0.53 6 41463785 41493470
TCONS_00062997 True 2650 mRNA 0.42 8 41463786 41501766

Neighbor

gene id symbol gene type direction distance location
XLOC_032255 wdr82 coding upstream 2395 41452979 ~ 41461390 (+)
XLOC_032256 dre-let-7j coding upstream 8912 41454791 ~ 41454873 (+)
XLOC_032254 cplane2 coding upstream 11941 41446541 ~ 41451844 (+)
XLOC_032253 cadpsb coding upstream 17732 41255485 ~ 41446053 (+)
XLOC_032252 opn1mw4 coding upstream 261231 41200500 ~ 41202554 (+)
XLOC_032258 cish coding downstream 2088 41503854 ~ 41506749 (+)
XLOC_032259 srgap3 coding downstream 53028 41554794 ~ 41757181 (+)
XLOC_032260 NA coding downstream 263872 41765638 ~ 41773554 (+)
XLOC_032261 NA coding downstream 277383 41779149 ~ 41788414 (+)
XLOC_032262 rad18 coding downstream 306907 41808673 ~ 41887398 (+)
XLOC_032251 AL732567.2 non-coding upstream 268984 41194687 ~ 41194801 (+)
XLOC_032245 NA non-coding upstream 380800 41080510 ~ 41082985 (+)
XLOC_032242 NA non-coding upstream 477650 40984597 ~ 40986135 (+)
XLOC_032231 NA non-coding upstream 807739 40652905 ~ 40656046 (+)
XLOC_032263 NA non-coding downstream 394618 41896384 ~ 41915013 (+)
XLOC_032265 BX664752.1 non-coding downstream 496197 41997963 ~ 41998096 (+)
XLOC_032266 CU694444.1 non-coding downstream 660884 42162650 ~ 42162774 (+)

Expression


Co-expression Network