XLOC_032260


Basic Information

Item Value
gene id XLOC_032260
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41765638 ~ 41773554 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064923
CGCTAGATGGCAGGAGACGATTAGCTCTGAATAACAGTCTTTGGCGGGCTGTTTGTGGCGCCAAATGTGGTCGGTCCAGACTAAGGCAATAAAGACTGCATTAAGCCCGCGGACTGTGTGTGCACCCTCTGGCCCAAccaacgtaaaacaaacaaaacaaaacgaaatgGGTAGCATCGCTCTCTGGGTGACAGGATTGGCTCCAGGTCAGATTAGTAAGAAAACACGGGATGGATAAACTTCAGTGTCAGTGTCCCTGACTGGATGAAAACAGTATGTTCATATACTGGCAAAACATGATTTCCATGACTCCTGATGAAACATTGAGGACTTATGAAGTGAAAAGATTGTTCAGGCTTTATTGGGGCAAATGAACTGCTGGCAGTCACTGTGCTAATGGAAAACCCTTGAGAACAACTGCCATCTGAATTGCataatgtactgtcattataAAATGTGTTTGCTGAGACAGCGGAGAAAACAACAGATATTGAGATCCAAAGACTAGAAAATTTCATTTGGTTGTGATGGACTGTGTTTTGTGCTTGTTTTAGAGAACTGGGTTTGGGTCTGAGTTTATGATGGTTCTATGTATATTTTCTGATACTTAAAGAATTTgttgaagtaaaaataaaaattctgttatttactcaccctcacctTGTTCCAAACCTCTTGAGTCCATCGTCCATTGTTCGAATGCaccatggcgtgacacaactgactcttaagggAACgatagatgagactctgattggttgcgTGCTA
>TCONS_00064925
CTGTTTGTGGCGCCAAATGTGGTCGGTCCAGACTAAGGCAATAAAGACTGCATTAAGCCCGCGGTGAGATGCGAATACAGGTCCGCGGCGTTGAAACCCATcgtgcttaccactggaccacaatggcactaTAACTGAGGACTGTGTGTGCACCCTCTGGCCCAAccaacgtaaaacaaacaaaacaaaacgaaatgGGTAGCATCGCTCTCTGGGTGACAGGATTGGCTCCAGGTCAGATTAGTAAGAAAACACGGGATGGATAAACTTCAGCTTTATTGGGGCAAATGAACTGCTGGCAGTCACTGTGCTAATGGAAAACCCTTGAGAACAACTGCCATCTGAATTGCataatgtactgtcattataAAATGTGTTTGCTGAGACAGCGGAGAAAACAACAGATATTGAGATCCAAAGACTAGAAAATTTCATTTGGTTGTGATGGACTGTGTTTTGTGCTTGTTTTAGAGAACTGGGTTTGGGTCTGAGTTTATGATGGTTCTATGTATATTTTCTGATACTTAAAGAATTTgttgaagtaaaaataaaaattctgttatttactcaccctcacctTGTTCCAAACCTCTTGAGTCCATCGTCCATTGTTCGAATGCaccatggcgtgacacaactgactcttaagggAACgatagatgagactctgattggttgcgTGCTA
>TCONS_00064924
CTGTTTGTGGCGCCAAATGTGGTCGGTCCAGACTAAGGCAATAAAGACTGCATTAAGCCCGCGGTGAGATGCGAATACAGGTCCGCGGCGTTGAAACCCATcgtgcttaccactggaccacaatggcactaTAACTGAGGACTGTGTGTGCACCCTCTGGCCCAAccaacgtaaaacaaacaaaacaaaacgaaatgGGTAGCATCGCTCTCTGGGTGACAGGATTGGCTCCAGCTTTATTGGGGCAAATGAACTGCTGGCAGTCACTGTGCTAATGGAAAACCCTTGAGAACAACTGCCATCTGAATTGCataatgtactgtcattataAAATGTGTTTGCTGAGACAGCGGAGAAAACAACAGATATTGAGATCCAAAGACTAGAAAATTTCATTTGGTTGTGATGGACTGTGTTTTGTGCTTGTTTTAGAGAACTGGGTTTGGGTCTGAGTTTATGATGGTTCTATGTATATTTTCTGATACTTAAAGAATTTgttgaagtaaaaataaaaattctgttatttactcaccctcacctTGTTCCAAACCTCTTGAGTCCATCGTCCATTGTTCGAATGCaccatggcgtgacacaactgactcttaagggAACgatagatgagactctgattggttgcgTGCTA
>TCONS_00064926
GTCGGTCCAGACTAAGGCAATAAAGACTGCATTAAGCCCGCGGACTGTGTGTGCACCCTCTGGCCCAAccaacgtaaaacaaacaaaacaaaacgaaatgGGTAGCATCGCTCTCTGGGTGACAGGATTGGCTCCAGGTCAGATTAGTAAGAAAACACGGGATGGATAAACTTCAGCTTTATTGGGGCAAATGAACTGCTGGCAGTCACTGTGCTAATGGAAAACCCTTGAGAACAACTGCCATCTGAATTGCataatgtactgtcattataAAATGTGTTTGCTGAGACAGCGGAGAAAACAACAGATATTGAGATCCAAAGACTAGAAAATTTCATTTGGTTGTGATGGACTGTGTTTTGTGCTTGTTTTAGAGAACTGGGTTTGGGTCTGAGTTTATGATGGTTCTATGTATATTTTCTGATACTTAAAGAATTTgttgaagtaaaaataaaaattctgttatttactcaccctcacctTGTTCCAAACCTCTTGAGTCCATCGTCCATTGTTCGAATGCaccatggcgtgacacaactgactcttaagggAACgatagatgagactctgattggttgcgTGCTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064923 False 768 lncRNA 0.42 4 41765638 41773554
TCONS_00064925 False 685 lncRNA 0.43 4 41765686 41773554
TCONS_00064924 False 646 lncRNA 0.43 4 41765686 41773554
TCONS_00064926 True 588 lncRNA 0.41 3 41765707 41773554

Neighbor

gene id symbol gene type direction distance location
XLOC_032259 srgap3 coding upstream 8457 41554794 ~ 41757181 (+)
XLOC_032258 cish coding upstream 258889 41503854 ~ 41506749 (+)
XLOC_032257 twf2a coding upstream 263872 41463785 ~ 41501766 (+)
XLOC_032255 wdr82 coding upstream 304248 41452979 ~ 41461390 (+)
XLOC_032256 dre-let-7j coding upstream 310765 41454791 ~ 41454873 (+)
XLOC_032261 NA coding downstream 5595 41779149 ~ 41788414 (+)
XLOC_032262 rad18 coding downstream 35119 41808673 ~ 41887398 (+)
XLOC_032263 NA coding downstream 122830 41896384 ~ 41915013 (+)
XLOC_032264 oxtr coding downstream 182801 41956355 ~ 41974205 (+)
XLOC_032265 BX664752.1 coding downstream 224409 41997963 ~ 41998096 (+)
XLOC_032251 AL732567.2 non-coding upstream 570837 41194687 ~ 41194801 (+)
XLOC_032245 NA non-coding upstream 682653 41080510 ~ 41082985 (+)
XLOC_032242 NA non-coding upstream 779503 40984597 ~ 40986135 (+)
XLOC_032231 NA non-coding upstream 1109592 40652905 ~ 40656046 (+)
XLOC_032266 CU694444.1 non-coding downstream 389096 42162650 ~ 42162774 (+)
XLOC_032268 BX957236.1 non-coding downstream 609640 42383194 ~ 42383446 (+)

Expression


Co-expression Network