XLOC_032261


Basic Information

Item Value
gene id XLOC_032261
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41779149 ~ 41788414 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064927
TTCACAGAGCAAAGAAAATGACAGATTCCAAACAAAATGAGGcatCAAACCCTTAAAAGGACCTGCAGGAAGTTATGATGCTGTCACAATGCTGCTACCATGGCGATGGCTCCTATATGCTTGCTTGTGCATTGTGtccacAGACGGTGATCGAGCTGGGCAAACTAGTAGCAGTGGAAAGCTGTCTGTACAGAAGAAGAACACAGTCAGTCGTGGACTAGTAGTCTGAAAAAAGGCTCTCTGCTTTCTCTGAGTGGACATCGGGGGCTGTAGGGACGTGCTCTGGGAGCAGAGAGAGCACTTTGGACCATACCCATAATCCAGCAGTAATCTGTTCTTAAATGCTAGACTCTGGCTGAAGGAGATGAGGGGTGACAGAGAGCCATGAACAGCAATAAACAAGAATCGGCTTGTGGAAAAGGTTGAGTATTGAGCTTCTGAAGGAAAGCCTTTACACTTTAGCTGAAGATTTGTGGGGAtccatcactctgt
>TCONS_00064928
CGCAGAGCAGCGCGTCAGCGCCAAGCAGGAGCGATGCATGAGGTGTGcagtccacAGACGGTGATCGAGCTGGGCAAACTAGTAGCAGTGGAAAGCTGTCTGTACAGAAGAAGAACACAGTCAGTCGTGGACTAGTAGTCTGAAAAAAGGCTCTCTGCTTTCTCTGAGTGGACATCGGGGGCTGTAGGGACGTGCTCTGGGAGCAGAGAGAGCACTTTGGACCATACCCATAATCCAGCAGTAATCTGTTCTTAAATGCTAGACTCTGGCTGAAGGAGATGAGGGGTGACAGAGAGCCATGAACAGCAATAAACAAGAATCGGCTTGTGGAAAAGGTTGAGTATTGAGCTTCTGAAGGAAAGCCTTTACACTTTAGCTGAAGGTGAGTATCAGTTATTACACAAGTCAGAAGTCCTATTAAGACATGAAGGAATCAAAGTAATTGCTCATTCACTCAGCAATCAAGAGTTAGATGACTTTTTTCCCGTCAGTAGAAcaataaagaagatttttagctgaaattggTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064927 False 492 lncRNA 0.47 5 41779149 41788414
TCONS_00064928 True 528 lncRNA 0.46 3 41780484 41783287

Neighbor

gene id symbol gene type direction distance location
XLOC_032260 NA coding upstream 5595 41765638 ~ 41773554 (+)
XLOC_032259 srgap3 coding upstream 21968 41554794 ~ 41757181 (+)
XLOC_032258 cish coding upstream 272400 41503854 ~ 41506749 (+)
XLOC_032257 twf2a coding upstream 277383 41463785 ~ 41501766 (+)
XLOC_032255 wdr82 coding upstream 317759 41452979 ~ 41461390 (+)
XLOC_032262 rad18 coding downstream 20259 41808673 ~ 41887398 (+)
XLOC_032263 NA coding downstream 107970 41896384 ~ 41915013 (+)
XLOC_032264 oxtr coding downstream 167941 41956355 ~ 41974205 (+)
XLOC_032265 BX664752.1 coding downstream 209549 41997963 ~ 41998096 (+)
XLOC_032266 CU694444.1 coding downstream 374236 42162650 ~ 42162774 (+)
XLOC_032256 dre-let-7j non-coding upstream 324276 41454791 ~ 41454873 (+)
XLOC_032251 AL732567.2 non-coding upstream 584348 41194687 ~ 41194801 (+)
XLOC_032245 NA non-coding upstream 696164 41080510 ~ 41082985 (+)
XLOC_032242 NA non-coding upstream 793014 40984597 ~ 40986135 (+)
XLOC_032268 BX957236.1 non-coding downstream 594780 42383194 ~ 42383446 (+)
XLOC_032271 NA non-coding downstream 815827 42604241 ~ 42610935 (+)

Expression


Co-expression Network