XLOC_032262 (rad18)


Basic Information

Item Value
gene id XLOC_032262
gene name rad18
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41808673 ~ 41887398 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063007
GGAAGTGACGCTGTTGTAGGAAGTGTTCAGTGGAGCGCGCGGGAGTTTATTGTTGCTATCTAGGGAGCTAGTGTTTATTAGCGTCCCAATATTATCCAAATAACACTAAAAACAGCAGAGGAGTTTGTTGAGAATGGCTCAGCTAAATGAAGTGGACTTACCGCCGAACCTGTCATGTCTCAAACCTATGGATACTCTCCTCCGATGTCCCATCTGCTTTGAGTTTCTCAACATCTCCATGATGACCCAGTGTTCACACAACTTTTGTTCTCTGTGCATTCGGAAGTTTCTCTCCTATAAGCTGTTGTGTCCTGTGTGTAACTCGCCATCAACAGAACAAGACCTCAGGAACAACAGATTATTAGACGACTTAGTTCAGAGCTTCCAGACGGCAAGGCTAAAATTGTGTCACTCAAATTTGGAATCGCCCCCCATTTCACCTGAAACCCCGACTATGGTGATCAAAGGCAAAGCAGCGAGACAGAAGGGCCTTAAAAAAGAATCGAGCAACCTCAGTCATTTTTTTCAGAAGAAGACCTCTGTGACTCTCCCGTCAGAGACTCTTCACGCCTCAGTCAAATCCGAACCTATGGAGGTGTGTGTTCAGCAACCTGGCATCTTCAAGCAAGAGAGTCTGGAGGATGCGAGAAACAGAGTGAAAGAGGAGAAGATGGATGTCACTGCTTTTCCTTCCACATCACAAAGCTGTAAGCCGGCGGTTAAAGTGGAATGTCCTGTCTGTGGAGTAGGTGTACCCGAacagcacattaataaacatctgGATATGTGCTTGAACAGAGACGATAAGAAGGAAGGATTGAGAAGCAGTGGAAGACGAAAGGCAATGCCCAAGCTGTTGTACACTTTGATAACTGTGCCAAAGCTCAAGAAGATGCTTAAAGAATGCCATCTTTCTGCTCAAGGCAACAGAGAGCAACTCACGAGACGCCATCAAGAATTCACGCACATCTATAATGCCCAGTGTGATGCACTCAACCCTAAATCAGctGAAGAAATCGCCAAAGAAGTTGAAGCCAATGAGCGACTAAAGAATCAGCTGGACAGTAAACGGAAACCTGTAATCATCACTACAAAGAACCAGACAGCCGAAGAAATTGAGGAGGTGCACTCGATGTATCGTAAGCAGCACAGTAGTGAGTTTTCCCGTCTAATTGCCCAGGTCAAAGGTCGTCTGGAGACTAAGAAAGCACAGGTGAAACAAGAAGAGGGAAATTCAACAGAGGAGACAGACTCTAAAGGTGTAAACTACAGCATTCAGAACAGTTCCCTTCCCATTTCCACATCACTGAAGGTGAAGAGTGAAGACACTGTAATTGAGCTTCCACCAAGATCATCAAGCCCTGCCATCAGTGAAGTGTCAGTCAGCAGCTCCATCTCTGATATCTTCTGTTGAAGACAAGACAGCAGCTACTCAAACGTGTTGAGCGAGTTCTTCTTCCCAGACGTCCAGAGCAGTGTTACACAGGGAGGTCTACTCTATCAGGGAAGATGTTTGAAGACCCTGCGAGAGACGACGTCCTCCGTTTATTATGTAACAAAAGTATCAGGTTCATGTTTTCAGTTTCCTGAGCCGAGCGTGTGGTTTAAATGTCTGGATTCTATTGACAGCATGTTATGTACGATAgtgtttttatataatttcatcaTAATTTTCTCcaataaaagagagaaaaaacaa
>TCONS_00063008
AGGTGTAAACTACAGCATTCAGAACAGTTCCCTTCCCATTTCCACATCACTGAAGGTGAAGAGTGAAGACACTGTAATTGAGCTTCCACCAAGATCATCAAGCCCTGCCATCAGTGAAGTGTCAGTCAGCAGCTCCATCTCTGATATCTTCTGTTGAAGACAAGACAGCAGCTACTCAAGTAAGAAGCACTTCAACAAAATGACATACACATTTCACACTTCATCACAGGCAGGCttacaaaatgtgttttttttttcatctttgccaacatttataaaatgtataaatcaagccattttgtttaatttttgtattcACAAAAggttattcatgcattcattcaattTCATTTAGATGATTGCACTTTATTTTGCCACTTATTATGAGCATGATTACAGTGTGCTGCTAGCTTATTTGTGCATACTTGAGCATATTACAGCTGTTTTTGCTTTCCTTCACTGTCTACCCATAAGATATAGTGTGAGGCCGCCACATACACGCCCTTTgctgaaaactctagatctttgcaACTTAACATCATTAAGACCTTTAGATAACAATTGATaacaattttggtgttgatctgaTGACATCCCTATCAGttcattaaaatatgttaaaatgacTTCTTTTGGGTTTGAGATTTTGCTCAAAGAGACTTTTTTTGTAGGTATTGGAATGTTTGATTTG

Function

symbol description
rad18 Predicted to enable metal ion binding activity; single-stranded DNA binding activity; and ubiquitin protein ligase activity. Predicted to be involved in postreplication repair and protein monoubiquitination. Predicted to act upstream of or within DNA repair. Predicted to be part of Rad6-Rad18 complex. Predicted to be active in nucleus. Orthologous to human RAD18 (RAD18 E3 ubiquitin protein ligase).

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0009411 response to UV biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0097505 Rad6-Rad18 complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-745 Predicted to enable metal ion binding activity; single-stranded DNA binding activity; and ubiquitin protein ligase activity. Predicted to be involved in postreplication repair and protein monoubiquitination. Predicted to act upstream of or within DNA repair. Predicted to be part of Rad6-Rad18 complex. Predicted to be active in nucleus. Orthologous to human RAD18 (RAD18 E3 ubiquitin protein ligase).

Ensembl:

ensembl_id ENSDARG00000027938

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063007 False 1699 mRNA 0.45 13 41808673 41887398
TCONS_00063008 True 691 processed_transcript 0.36 2 41853372 41869189

Neighbor

gene id symbol gene type direction distance location
XLOC_032261 NA coding upstream 20259 41779149 ~ 41788414 (+)
XLOC_032260 NA coding upstream 35119 41765638 ~ 41773554 (+)
XLOC_032259 srgap3 coding upstream 51492 41554794 ~ 41757181 (+)
XLOC_032258 cish coding upstream 301924 41503854 ~ 41506749 (+)
XLOC_032257 twf2a coding upstream 306907 41463785 ~ 41501766 (+)
XLOC_032263 NA coding downstream 8986 41896384 ~ 41915013 (+)
XLOC_032264 oxtr coding downstream 68957 41956355 ~ 41974205 (+)
XLOC_032265 BX664752.1 coding downstream 110565 41997963 ~ 41998096 (+)
XLOC_032266 CU694444.1 coding downstream 275252 42162650 ~ 42162774 (+)
XLOC_032267 gpx1b coding downstream 450911 42338309 ~ 42341219 (+)
XLOC_032256 dre-let-7j non-coding upstream 353800 41454791 ~ 41454873 (+)
XLOC_032251 AL732567.2 non-coding upstream 613872 41194687 ~ 41194801 (+)
XLOC_032245 NA non-coding upstream 725688 41080510 ~ 41082985 (+)
XLOC_032268 BX957236.1 non-coding downstream 495796 42383194 ~ 42383446 (+)
XLOC_032271 NA non-coding downstream 716843 42604241 ~ 42610935 (+)

Expression


Co-expression Network