XLOC_032263


Basic Information

Item Value
gene id XLOC_032263
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41896384 ~ 41915013 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064680
CTCTCTATTATCTGTGTCTCCTTGCTCCTCTGTTTCAGGCTGCAAAGCTCCTGTGCTTGTCATCCATAGTCATAACAGCCGACTCTGGGCTTGGAAAGGCACTCAAGCAGGCAGGAGGCTTATCATCAGAGCCAAGAACCAGGAGGCATGGCCTGATGGGGAAAGGTCACAGTCATTAGACGAGCCCACTGTCCTGTTTGGAGAAGAAGAGTCTCTTCAGATTACATATTGTCCAGCCATGCAGTGGACCATGTTTAGTGAAGGGCCTGAACCAGAAGAGAACCAGATTGATTGCTCTGATTTTCTCCCACTGCAATCTCATGGGCGGAAAGCTGACTTCCTATTGAAGAGTCTCCTATCATCAAATTAGCTTTTCATTTGTCCACCTGAATGGCGCTGATAAGTATAACAATGAAGCCCTGTGACAGCAGATGGCTATACGTCTGAAGCTCTTGATTATCTCACGAT
>TCONS_00063009
TGTCTGTCCACCATTTCTAATCAAGTGCTGAGTTTTCATGTTGAAATTCCTTAAATGAAGCCTTCTCTGGGTTGTGTCTTCCTTCATTTTCTAGGTTTAAAAGTGGAATGCATGTATAGATTGAGCTAGCAGAGGAAATTGGGCTTCCTTTTTTAAGCTCTGATGATTGAACACAAATTGTCTGGCTTGTGTTTTGGTGAGTAAAACGCAACACAGAAATGACTTTTTTTCCCTCCTTCACTGTTGCTTTTAGATATTGTCCAGCCATGCAGTGGACCATGTTTAGTGAAGGGCCTGAACCAGAAGAGAACCAGATTGATTGCTCTGATTTTCTCCCACTGCAATCTCATGGGCGGAAAGCTGACTTCCTATTGAAGAGTCTCCTATCATCAAATTAGCTTTTCATTTGTCCACCTGAATGGCGCTGATAAGTATAACAATGAAGCCCTGTGACAGCAGATGGCTATACGTCTGAAGCTCTTGATTATCTCACGATGGCGTAAATTGAAGCAAACAGCAGCTGGAGATGAGCGTGAAGTTCAGAAGGAACCACCAACTG
>TCONS_00063010
TGTCTGTCCACCATTTCTAATCAAGTGCTGAGTTTTCATGTTGAAATTCCTTAAATGAAGCCTTCTCTGGGTTGTGTCTTCCTTCATTTTCTAGGTTTAAAAGTGGAATGCATGTATAGATTGAGCTAGCAGAGGAAATTGGGCTTCCTTTTTTAAGCTCTGATGATTGAACACAAATTGTCTGGCTTGTGTTTTGGTGAGTAAAACGCAACACAGAAATGACTTTTTTTCCCTCCTTCACTGTTGCTTTTAGATATTGTCCAGCCATGCAGTGGACCATGTTTAGTGAAGGGCCTGAACCAGAAGAGAACCAGATTGATTGCTCTGATTTTCTCCCACTGCAATCTCATGGGCGGAAAGTGATGCTATGGGAGGTTTTCCACATCCCACAAGTCACATTAAGGAAGAGAAGATGTGGAGTAGATCAGAATCTGTAACATCCAGCTTGATCCCAATCTCTTCTGCTGCCTCCAGATGGCCTTGAGGAATTGAAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117615

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064680 False 468 lncRNA 0.47 4 41896384 41910407
TCONS_00063009 False 559 lncRNA 0.42 2 41909373 41910470
TCONS_00063010 True 496 lncRNA 0.42 2 41909373 41915013

Neighbor

gene id symbol gene type direction distance location
XLOC_032262 rad18 coding upstream 8986 41808673 ~ 41887398 (+)
XLOC_032261 NA coding upstream 107970 41779149 ~ 41788414 (+)
XLOC_032260 NA coding upstream 122830 41765638 ~ 41773554 (+)
XLOC_032259 srgap3 coding upstream 139203 41554794 ~ 41757181 (+)
XLOC_032258 cish coding upstream 389635 41503854 ~ 41506749 (+)
XLOC_032264 oxtr coding downstream 41342 41956355 ~ 41974205 (+)
XLOC_032265 BX664752.1 coding downstream 82950 41997963 ~ 41998096 (+)
XLOC_032266 CU694444.1 coding downstream 247637 42162650 ~ 42162774 (+)
XLOC_032267 gpx1b coding downstream 423296 42338309 ~ 42341219 (+)
XLOC_032268 BX957236.1 coding downstream 468181 42383194 ~ 42383446 (+)
XLOC_032256 dre-let-7j non-coding upstream 441511 41454791 ~ 41454873 (+)
XLOC_032251 AL732567.2 non-coding upstream 701583 41194687 ~ 41194801 (+)
XLOC_032245 NA non-coding upstream 813399 41080510 ~ 41082985 (+)
XLOC_032271 NA non-coding downstream 689228 42604241 ~ 42610935 (+)
XLOC_032272 BX005129.4 non-coding downstream 703889 42618902 ~ 42622652 (+)

Expression


Co-expression Network