G1329494


Basic Information

Item Value
gene id G1329494
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79605318 ~ 79607575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1519032
cagggcccatagggttctgatctaaagtagtgcactatatagggaatagggtgccagggcccataggattctgatctaaagtagtgcactatatagggaatagggtgccatttgggaaacagacATTGTCTTCATAGCTCAGCAACGTTCGATTTTGCTCACGTTGGAACTACCGCATTGATCTTAAACCCATCAATCGATCTGATTATCCATATTACTCTGGCCTTCATCATTATCAGAAGGTTTCACACCCTCCGTCACATCATTTCTTATGGATGTACTACACTGTTTCAGTACATAGGAAACATAAACATCAAGAGAGACTAAATGTGCAGTTTATCTTTCTGATTCAGATGTATTGGTATGAACGCGAtccaatcCCCCCCCTGTCCCTGGTATGAACGCGAtccaatcctcctcctgtccctggtatgaacgcgatccaatcctcctcctgtccct
>TU1519035
GGTGTTCCCACACGTCCCTCCATGAAAACATATATAtaatgccctggaccagagcgATGTATTAGATAGCTCTGGTCCACGGTGTTACCACACGTCCTTCCATGAagacatatatatataatgccctggaccagagctatgtATTGGATAGCTCTGGTCCACGGTGTTACCACACGTTCCTCCATGAagacatatatatataatgccctggaccagagctatgtATTGGATAGCTCTGGTCCACGGTGTTACCACACGTCCTTCCATGAagacatatatatataatgcCCTGAACCAGAGCGATGTATTGGATAGCTCTGGTCCACGGTGTTACCACACGTCCTTCCATGAAGACATATATGATAATAATGCCCTGGATCAAAGCTATGGTTATGGGCCCAGGGCCCATATGGGCCAGATAGggcccaggtcaacagtagtgcactatgtagggaataggatgccgtttGAGATACATCCTATGTCTTTTAAACTAAAAGCAATGATTTGTACAGTATACAATACAAAGTGTTAATACGATTTTAACTGCTGATATGTAAATGACTTGCTATGAGTGCACAAGTCATTTAATAAATTATTAAGATGTTATTGAACCTAAATAAGGTGTTTAAATATCTTTTTTTATATTCGTTGTATAAAAGATTCTGTTCTGTTGGAAACACGTCATTACGAAGCTTCCTTCATATTGGGTCATGTCTcgattggcaccctattccctatatagtgcactactttggaccaggacctgcatagagaatagggtgccagggcccatagggttctgatctaaagtagtgcactatatagggaatagggtgccatttgggaaacagacATTGTCTTCATAGCTCAGCAACGTTCGATTTTGCTCACGTTGGAACTACCGCATTGATCTTAAACCCATCAATCGATCTGATTATCCATATTACTCTGGCCTTCATCATTATCAGAAGGTTTCACACCCTCCGTCACATCATTTCTTATGGATGTACTACACTGTTTCAGTACATAGGAAACATAAACATCAAGAGAGACTAAATGTGCAGTTTATCTTTCTGATTCAGATGTATTGGTATGAACGCGAtccaatcCCCCCCCTGTCCCTGGTATGAACGCGAtccaatcctcctcctgtccctggtatgaacgcgatccaatcctcctcctgtccct
>TU1519033
GGTGTTCCCACACGTCCCTCCATGAAAACATATATAtaatgccctggaccagagcgATGTATTAGATAGCTCTGGTCCACGGTGTTACCACACGTCCTTCCATGAagacatatatatataatgccctggaccagagctatgtATTGGATAGCTCTGGTCCACGGTGTTACCACACGTTCCTCCATGAagacatatatatataatgccctggaccagagctatgtATTGGATAGCTCTGGTCCACGGTGTTACCACACGTCCTTCCATGAagacatatatatataatgcCCTGAACCAGAGCGATGTATTGGATAGCTCTGGTCCACGGTGTTACCACACGTCCTTCCATGAAGACATATATGATAATAATGCCCTGGATCAAAGCTATGGTTATGGGCCCAGGGCCCATATGGGCCAGATAGggcccaggtcaacagtagtgcactatgtagggaataggatgccgtttGAGATACATCCTATGTCTTTTAAACTAAAAGCAATGATTTGTACAGTATACAATACAAAGTGTTAATACGATTTTAACTGCTGATATGTAAATGACTTGCTATGAGTGCACAAGTCATTTAATAAATTATTAAGATGTTATTGAACCTAAATAAGGTGTTTAAATATCTTTTTTTATATTCGTTGTATAAAAGATTCTGTTCTGTTGGAAACACGTCATTACGAAGCTTCCTTCATATTGGGTCATGTCTcgattggcaccctattccctatatagtgcactactttggaccaggacctgcatagagaatagggtgccagggcccatagggttctgatctaaagtagtgcactatatagggaatagggtgccatttgggaaacagacATTGTCTTCATAGCTCAGCAACGTTCGATTTTGCTCACGTTGGAACTACCGCATTGATCTTAAACCCATCAATCGATCTGATTATCCATATTACTCTGGCCTTCATCATTATCAGAAGGTTTCACACCCTCCGTCACATCATTTCTTATGGATGTACTACACTGTTTCAGTACATAGGAAACATAAACATCAAGAGAGACTAAATGTGCAGTTTATCTTTCTGATTCAGATGTATTGGTATGAACGCGAtccaatcctcctcctgtccctggtatgaacgcgatccaatcctcctcctgtccctggtatgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1519032 False 462 lncRNA 0.45 2 79605318 79606789
TU1519035 False 1194 lncRNA 0.42 3 79605318 79607575
TU1519033 True 1168 lncRNA 0.42 2 79606354 79607575

Neighbor

gene id symbol gene type direction distance location
LOC110536863 LOC105029310 coding downstream 116190 79487003 ~ 79489128 (-)
LOC118938873 LOC106590959 coding downstream 265313 79307180 ~ 79340005 (-)
LOC118938905 NA coding downstream 687185 78878740 ~ 78918133 (-)
LOC118936340 LOC106592244 coding downstream 909537 78677394 ~ 78695781 (-)
LOC118938904 LOC106592658 coding downstream 965544 78637911 ~ 78639774 (-)
LOC118938874 NA coding upstream 1971 79609180 ~ 79612871 (-)
LOC110513674 LOC106593057 coding upstream 10927 79618502 ~ 79623426 (-)
LOC118938876 NA coding upstream 64468 79667754 ~ 79691305 (-)
LOC118938877 LOC106594098 coding upstream 84043 79691618 ~ 79695469 (-)
LOC110510401 LOC106592932 coding upstream 303107 79910682 ~ 80084406 (-)
G1329484 NA non-coding downstream 438 79604612 ~ 79604880 (-)
G1329492 NA non-coding downstream 9827 79595213 ~ 79595491 (-)
G1329490 NA non-coding downstream 14986 79588644 ~ 79590332 (-)
G1329486 NA non-coding downstream 30596 79574294 ~ 79574722 (-)
G1329480 NA non-coding downstream 40810 79564173 ~ 79564508 (-)
G1329514 NA non-coding upstream 67948 79675523 ~ 79679348 (-)
G1329527 NA non-coding upstream 111986 79719561 ~ 79721145 (-)
G1329495 NA non-coding upstream 113927 79721502 ~ 79751236 (-)
G1329481 NA other downstream 37346 79567334 ~ 79567972 (-)
G1329475 NA other downstream 62165 79542794 ~ 79543153 (-)
G1329004 NA other downstream 529782 79075290 ~ 79075536 (-)
G1328987 NA other downstream 574362 79029667 ~ 79030956 (-)
G1328892 NA other downstream 679181 78925914 ~ 78926137 (-)
G1329577 NA other upstream 271833 79879408 ~ 79880360 (-)
LOC110510850 NA other upstream 525513 80133088 ~ 80139431 (-)
LOC110510397 LOC106596262 other upstream 557997 80151017 ~ 80231658 (-)

Expression

G1329494 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

G1329494 Expression in each Bioproject

Bar chart with 15 bars.
G1329494 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network