G1329153 (LOC106593057)


Basic Information

Item Value
gene id G1329153
gene name LOC106593057
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79618397 ~ 79621951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1518584
gggggggtttggtatCCCGGTATGTCTCCTCCTCTGTGGGGAGGAAGGGGGGGTTTGGTATCCCGGTATGTCTCCTCCtctgtggggaggggagggggggggggggaggggttgGTATCCCGGtatgtctcctcctctgtttaaGATATGGTTGAggtgtgtcctgtcctgtcctgtccagtctaAACAGTAGTTCCGTCACACCGTGCTGTATTCACCAAGGTCCCTCGACAAGCTATTGAAACACTGACGTCATGCATGAAATCACCCAGGATACATGGTACCGTAGTCAGGTAGGCCGTAATGCAGTAGTTTGACATGCCATGATCTTCccaaaaaatacataaataaagatGTTTCTGTTCCCTTAAGATTTAACATTCAGCTCTTAAATGCTCCTAAATAAGTAATAACTTAAATAATAAATAAGCAGTGCACTTTTGGTGAAAcctaaatgagagagagagagaaacccaaaCACATAAAAAGAGTGAATTGGTTCGTCTTGGATCCGGTTTTGGGAGGAGAATATAATacaggctgttgttgttgttttaaattATACAAATAATGCAACATTACTGTGATGTGTCGCGCATGCCAGTAATATAAAACAGTGTCTCAACATGCTAATTTCAagctttttttttatatatatatttttcttaatgAAGATTATTATCTCGCATGGCATCATCATCATCGTGTTATCGTCACACCCCTGTGGGATTAGAGCAGGTGTTTTTAGTTTCAGCATCTGCTGGGATAGAAAGTAGCAGCAGTTTTACAGATGTCATCTGGTCTACAAACAGCCCCCACTTCTCATCATGTCTCCTTGGCAACAGGAGACCAGTGTTTTAGTTCAATCTCTGTTTTCTGTGTgggttttgtttgttgtttgtttctattGTGATAAAGTGCTTAGCTGATCACTCAGTAGGTCTCCGGGTAACTAGCAATCGTCGGAACAACAACTGCACCTAGCGGACAACGTTggtcgatctctctctctctctctctctgactgcagaTGGTTGTTGGGTTCGGGCTGAGATTCCATATTCCTTTTCTCTTTCTTCAGCAGATGCCGGTGCATTACGCAACTCACCCTCACCCAAGTTCCACTGTAATCCATAATCCATTATCCATAATCCATTATCAATTATCCATGATCCATGATACATTATCCATGATACATTATCCATGATACATTATCCATGATCCATTATCCATGATCCATTATCCATGATCCATTATCCATGCAAAACCGTTTCTTCTTCAACGATCATGTTGTGTTTTCCCCGTGTCATGTTGTGTTTTCCCCGTGTCATGTTGTGTTTTCCCCGTGTCATGTTGTGTTTTCCCCGTGTCATGTTGTGTTTTCCCCGTGTCATGTTGTGTTTTCCCCGTGTCATATTTCAACGGCAGGATGTTTTCCGGAATATCTCCGATAACGTTAGGAACATAAAGATAATATGTTACTATAATACTTTTATCATTCCCATTTTGAGAGTCAAAcaaaccttttttatttttttttaatcctctTTTGGTGAAACAGTTTTCTCTCTATTCATTCAAATGTAATTAAcgcaaatgcaaaaaaaaaacgcATTATTAACGAAGTTAAATCAAGCATTTCCCGAAACGTTTCTACAATATCTACAACGAACGGTGTGTCCTCATATCCCCATGATGTCTATCGCTGCCATATAGAATTAATGTATATATTTCTAGACGTCAGTCAGCAGCTTGCCCTTATTCACGCAGTTCTGGTTGAGGACAGGCGTACAGTTAGCAGTTCTGAGATTCGCGTCCCTAAAGTTATCAATGCTATTGTTGATCCCTTCGTCTATTTCCATGTATTCTGACTTGCTGGCGATAGAGTTGGAGCTGCGGCGCGATGAGTTGCTGTCTGAGTTAAGGTCCTGGTTGCTGACGTTAAGAAGCTGCGcctgctcctctccctccgtctcccggTGATAGAAATAGTTAAAGTTGGACACGATCACAGGCACCGGCAGCGCGATGGTCAGCACCCCGGCGATGGCGCAGAGCGAGCCCACTATCTTTCCGCCGATGGTCACCGGGTACATGTCCCCGTAGCCCACTGTTGTCATGGAGACCACGGCCCACCAGAAGGCGTCGGGGATGCTTGTGAAGAAAGATTCCTTCTCCTCCGCCTCGGCGAAATAGACAGCGCTAGAGAAGAGGATGACTCCGATGAAGAGGAAGAAAATGAGCAACCCCAACTCTCTCATACTGGCTTTGAGGGTTTGTCCTAATATCTGAAGCCCCTTGGAGTGTCTGGACAGCTTGAAGATCCTGAACACCCTGACCAGCCGGATGACCCTGAGGATGGCCAGAGACGCGGCCTGCTCACTTGGTTTCTCCTTCCCCTCCTGGTCCTCTGCCAGCTCGGTGCCCAGCGTGATGAAGTAGGGTATGATAGCTACTATGTCTATAGTATTCATCATGTTTTTAAAGAAAGCTGCCTTGCTAGGGCAGGCGAAGAACCTCACAATCAACTCAAAGGAGAACCAGATTATACACAGGGTCTCCACTATGAAGAAAGGATCGGTGAGAATATTTGGTTTATAATAGAATGTCACGTTGCCTACAGTTTCCATCCTACCCCTGGGGTCCTCTTTGAGTTCTGGCAGCGTCTCCAAACAGAATATGACTATTGAAATTAAGATAACCATCACCGATACTATAGCTATCCCTCTGGCGGGTCCCGAACTCTCCGGGTATTCAAACAGCAACCAGACCTGTCGTTGAAACTCTTTCTCTGGTAACGGTTTTTCCTCTTCTCTAATAAAACCTTCGTCTTCTCTAAACTTCTCCATGGCCTCTGCCCCGAGCTCGTAGAACTTGATCTCCTCGGAGAACATATCCAGAGGAACGTTAACGGGCCTCCTCAACCGCCCACCGGACTGGTAGTAATATAGAATAGCGTCAAAACTCGGTCGGTTCCGGTCAAAAAAGTACTCGTTTCTAAGCGGGTCGAAGTAGCGCATTCTCTTTTTGGGGTTACCTAGTAACGTCTCGGGGAACTGACTGAGTGTCTTTAGCTGGGTCTCGAAGCGCAGCCCTGAGATATTAATGACAACCCTCTCGCAGCACTCGTGGTCCTCGTGGTCTGGTGGGTAGGTGTCCTGCAGGTGCCCCGGCAGGGTGGACGTCTCATCCATGTTATCTCCGGCCACCACAGTCATCCTGGCGGTGTTGCCCGGGCTCAGCGCAGCGCTATGCGGCAGGAGATGCTCGGCTCAGCCCGGTGGGTGCAGGCATCTAGTAGCTCTCACTGCGCGCCTCAgatttctcccctctctctcttctgtctgatAGAAATCCCCTTTGCATTCACCCGGGCCAGGCAGGCAGAGGGCTAGCTCGCCAAGCGCTGCTCCTCTTAAGGCTCCCTTGCTCCTCTCTCCGAGTAGTCCTCCATTGCtgctcctccttcttcttcttctccttcgtCTTC

Function

NR:

description
potassium voltage-gated channel subfamily A member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1518584 True 3490 TUCP 0.47 3 79618397 79621951

Neighbor

gene id symbol gene type direction distance location
LOC118938875 NA coding upstream 4654 79608818 ~ 79640460 (+)
LOC118938872 large1 coding upstream 325364 79148465 ~ 79293033 (+)
LOC118938871 braf coding upstream 791662 78780201 ~ 78826735 (+)
LOC118936267 mrps33 coding upstream 854409 78749330 ~ 78763988 (+)
LOC110510817 LOC106592244 coding upstream 960178 78649574 ~ 78658219 (+)
LOC118938878 NA coding downstream 96925 79718876 ~ 79720972 (+)
LOC110511598 LOC106595231 coding downstream 217447 79839398 ~ 79880370 (+)
LOC118936540 LOC106591976 coding downstream 487129 80109080 ~ 80133699 (+)
LOC110517730 LOC105026518 coding downstream 581189 80203140 ~ 80213290 (+)
LOC110517212 rtcb coding downstream 646993 80268944 ~ 80284094 (+)
G1329152 NA non-coding upstream 13485 79604569 ~ 79604912 (+)
G1329146 NA non-coding upstream 42787 79574962 ~ 79575610 (+)
G1329142 NA non-coding upstream 68214 79549964 ~ 79550183 (+)
G1329139 NA non-coding upstream 75699 79542280 ~ 79542698 (+)
G1329137 NA non-coding upstream 81654 79536534 ~ 79536743 (+)
G1329159 NA non-coding downstream 41963 79663914 ~ 79664732 (+)
G1329160 NA non-coding downstream 43006 79664957 ~ 79667655 (+)
G1329161 NA non-coding downstream 45805 79667756 ~ 79672839 (+)
G1329176 NA non-coding downstream 87103 79709054 ~ 79710130 (+)
G1329179 NA non-coding downstream 94349 79716300 ~ 79716873 (+)
G1328968 NA other upstream 578940 79038604 ~ 79039457 (+)
G1328201 NA other upstream 1547994 78070029 ~ 78070403 (+)
LOC110490691 arhgef39 other upstream 1600586 77958971 ~ 78066964 (+)
G1329273 NA other downstream 363642 79985593 ~ 79985951 (+)
G1329827 NA other downstream 796513 80418464 ~ 80419259 (+)
G1329865 NA other downstream 867897 80489848 ~ 80490772 (+)

Expression


Co-expression Network