G1329577


Basic Information

Item Value
gene id G1329577
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79879408 ~ 79880360 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1519160
tttattggtatgtaactgttatgaaagttgtttTGTCAATTTAGTTTTGTATTTAAACTTTAAATGTTTACATGACACTGTATCAACATGTCCCCATGGGGCCAATGAAGTCAGTCAGTTGTGCACCAAAACAAACTGGATTATGTCACAGGAGAAAGAAAAGGAACAGATTCTGGGAGCCATCTTGTTTCAGCAGCAACAGGTGGTTGGGGGACATTCTTCAAAAACAGGTCATCCCAGTAGACAATCACAGCGTGTCTGTTTTGTTGGTTTGAGTAGCTGGGTGTTGGGCTGTGCAGTGGAGCCTGTCCGTACGGTGGTGGGCTGGTACCGGGTCTGGTACCGGGGCTGGTATCAGGGCAGTACCTCTGCTTGTGGGCAGCGGGAGCTGAAGACTGTATGGTAATGTTCTATAAGGATCTCAGTGAAGATGTTGAGCGGTGTTagagatgtcagagagacagagcccTGAGAAGGCCAGGACAGATTGACACCAAACACACAAGCCAGGTTGGAGGGAGACATCTTGTTGATGATACTCTGCTGAGAgac
>TU1519163
tttattggtatgtaactgttatgaaagttgtttTGTCAATTTAGTTTTGTATTTAAACTTTAAATGTTTACATGACACTGTATCAACATGTCCCCATGGGGCCAATGAAGTCAGTCAGTTGTGCACCAAAACAAACTGGATTATGTCACAGGAGAAAGAAAAGGAACAGATTCTGGGAGCCATCTTGTTTCAGCAGCAACAGGTGGTTGGGGGACATTCTTCAAAAACAGGTCATCCCAGTAGACAATCACAGCGTGTCTGTTTTGTTGGTTTGAGTAGCTGGGTGTTGGGCTGTGCAGTGGAGCCTGTCCGTACGGTGGTGGGCTGGTACCGGGTCTGGTACCGGGGCTGGTATCAGGTGGTACCGGGGCTGGCATCGGGGCTGGTATCAGGTGGTATCGGGGCTGGTATCAGGGCTGGTATCAGGGCTGGTATCAGGGCTGGTATCAGGGCAGTACCTCTGCTTGTGGGCAGCGGGAGCTGAAGACTGTATGGTAATGTTCTATAAGGATCTCAGTGAAGATGTTGAGCGGTGTTagagatgtcagagagacagagcccTGAGAAGGCCAGGACAGATTGACACCAAACACACAAGCCAGGTTGGAGGGAGACATCTTGTTGATGATACTCTGCTGAGAgac
>TU1519164
tttattggtatgtaactgttatgaaagttgtttTGTCAATTTAGTTTTGTATTTAAACTTTAAATGTTTACATGACACTGTATCAACATGTCCCCATGGGGCCAATGAAGTCAGTCAGTTGTGCACCAAAACAAACTGGATTATGTCACAGGAGAAAGAAAAGGAACAGATTCTGGGAGCCATCTTGTTTCAGCAGCAACAGGTGGTTGGGGGACATTCTTCAAAAACAGGTCATCCCAGTAGACAATCACAGCGTGTCTGTTTTGTTGGTTTGAGTAGCTGGGTGTTGGGCTGTGCAGTGGAGCCTGTCCGTACGGTGGTGGGCTGGTACCGGGTCTGGTACCGGGGCTGGTATCGGGGGAAGGTATCAGGTGGTACCGGGGCTGGCATCGGGGCTGGTATCAGGGCTGGTATCAGGGCTGGTATCAGGGCAGTACCTCTGCTTGTGGGCAGCGGGAGCTGAAGACTGTATGGTAATGTTCTATAAGGATCTCAGTGAAGATGTTGAGCGGTGTTagagatgtcagagagacagagcccTGAGAAGGCCAGGACAGATTGACACCAAACACACAAGCCAGGTTGGAGGGAGACATCTTGTTGATGATACTCTGCTGAGAgac
>TU1519165
tttattggtatgtaactgttatgaaagttgtttTGTCAATTTAGTTTTGTATTTAAACTTTAAATGTTTACATGACACTGTATCAACATGTCCCCATGGGGCCAATGAAGTCAGTCAGTTGTGCACCAAAACAAACTGGATTATGTCACAGGAGAAAGAAAAGGAACAGATTCTGGGAGCCATCTTGTTTCAGCAGCAACAGGTGGTTGGGGGACATTCTTCAAAAACAGGTCATCCCAGTAGACAATCACAGCGTGTCTGTTTTGTTGGTTTGAGTAGCTGGGTGTTGGGCTGTGCAGTGGAGCCTGTCCGTACGGTGGTGGGCTGGTACCGGGTCTGGTACCGGGGCTGGTATCAGGTGGTACCGGGGCTGGTATCGGGGGAAGGTATCAGGTGGTACCGGGGCTGGCATCGGGGCTGGTATCAGGTGGTATCGGGGCTGGTATCAGGTGGTATCGGGGCTGGTATCAGGTGGTATCGGGGCCGGTACCGGGGCTGGTATCGGGGGAAGGTATCAGGTGGTATCGGGGCTGGTATCGGGGCTGGTCCCGGGGCTGGTATCAGGGCTGGTATCAGGGCTGGTATCAGGGCTGTACCTCTGCTTGTGGGCAGCGGGAGCTGAAGACTGTATGGTAATGTTCTATAAGGATCTCAGTGAAGATGTTGAGCGGTGTTagagatgtcagagagacagagcccTGAGAAGGCCAGGACAGATTGACACCAAACACACAAGCCAGGTTGGAGGGAGACATCTTGTTGATGATACTCTGCTGAGAgac

Function

NR:

description
rho GTPase-activating protein 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1519160 False 552 lncRNA 0.47 2 79879408 79880360
TU1519163 False 644 TUCP 0.49 3 79879408 79880360
TU1519164 False 623 TUCP 0.49 3 79879408 79880360
TU1519165 True 782 TUCP 0.52 4 79879408 79880360

Neighbor

gene id symbol gene type direction distance location
LOC118938877 LOC106594098 coding downstream 183939 79691618 ~ 79695469 (-)
LOC118938876 NA coding downstream 188103 79667754 ~ 79691305 (-)
LOC110513674 LOC106593057 coding downstream 255982 79618502 ~ 79623426 (-)
LOC118938874 NA coding downstream 266537 79609180 ~ 79612871 (-)
LOC110536863 LOC105029310 coding downstream 390280 79487003 ~ 79489128 (-)
LOC110510401 LOC106592932 coding upstream 30322 79910682 ~ 80084406 (-)
LOC110510850 NA coding upstream 254594 80133088 ~ 80139431 (-)
LOC110510397 LOC106596262 coding upstream 270657 80151017 ~ 80231658 (-)
LOC118938879 LOC106591974 coding upstream 271743 80152103 ~ 80153698 (-)
LOC118938880 NA coding upstream 342661 80223008 ~ 80224268 (-)
G1329570 NA non-coding downstream 19929 79859049 ~ 79859479 (-)
G1329565 NA non-coding downstream 32321 79846377 ~ 79847087 (-)
G1329562 NA non-coding downstream 37292 79841314 ~ 79842116 (-)
G1329539 NA non-coding downstream 46168 79831666 ~ 79833240 (-)
G1329549 NA non-coding downstream 68329 79808798 ~ 79811079 (-)
G1329555 NA non-coding upstream 25068 79905428 ~ 79905749 (-)
G1329553 NA non-coding upstream 25544 79905904 ~ 79907749 (-)
G1329554 NA non-coding upstream 28919 79909279 ~ 79910086 (-)
G1329580 NA non-coding upstream 40522 79920882 ~ 79923651 (-)
G1329581 NA non-coding upstream 53541 79933901 ~ 79934240 (-)
G1329481 NA other downstream 311436 79567334 ~ 79567972 (-)
G1329475 NA other downstream 336255 79542794 ~ 79543153 (-)
G1329004 NA other downstream 803872 79075290 ~ 79075536 (-)
G1328987 NA other downstream 848452 79029667 ~ 79030956 (-)
LOC110517959 LOC106593769 other upstream 377187 80242189 ~ 80268839 (-)
LOC110516867 LOC106594631 other upstream 424941 80286961 ~ 80347887 (-)
G1329538 NA non-coding downstream 40598 79769801 ~ 79838810 (-)

Expression


Co-expression Network