XLOC_032269 (mst1ra)


Basic Information

Item Value
gene id XLOC_032269
gene name mst1ra
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42475730 ~ 42505007 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063017
TAGGCGTGTTCTGTGAATGGGGGTTTGACCGTGTTTTTTCTCATGCATGCTAATGCGTGAAGTCGAAACCGTCCCGTACGAGGAAACTAGCAAATTTGGCGAGTTCCAACAACAGGTTGGCTAAATTTGTTTATAATCTCTGTTACCGTTTTCTGTGGAGTTTCTGTAACTGACGTTTGAGGACTCTCGCTGACTGTTCATTGGACTTCATTGGAGATAGAGGTAAAAGGCCACAGGTGAGCCTCAGGTTCTGGTTATCGTCATCATGTGTTAGCAGTAAAGCAGTGACAGCAGGACAGTGGAGATGTTCATCAGCCCAAAGACCTTGTTAACATGTTTCTGGTTGCAGATACATCTGACCTGTGCCCAAAAAACATGCCCTACCATCCAACAAATGAATGTAAACTTTTCTGTGACCTACCCAGTCTACTTTTTCCAAACCACCAATGCCATACAGAACATagtttttaatgaatattttgatgAAGTTTATGTGGCCTCTCAAAATGTAGTTGAAGCCTTGGACAAAAATCTTACCAAACTATGGGAATTAAAAACGGGACCAGTTGGCAGTCCAGATTGTCAGACGTGTAACTGTGATATTGAGAACGAACCGGGAACATCATTGGACACTGATAACCAAGTTCTTGTTTTGGAGCCTCAGCAGCATCTGGACTTCCTGTACATCTGTGGGAGCACCCAGTATGGAGTCTGTAACATGCTTGAACTTGATAAAGGCAACATAGCCTCTAGCCCcgaatgtttatttaataaaaaagccAACTCACCCTCTGATTGTCCAGACTGCGTTGCCAGTCCTCTGGGAACGAAGGTCACTGTGGTAGACGAGGGTTATTCAACATACTTCTTCACAGCAGCCACCGTCAACAGCACCATTGCTGGGTCTTTCGGCAAACACTCACTTTCTATCCGTCGCTTGCTTAACACAGAAAATGGTTTCCATGATGTGAAGAATCTGACCGTTCTTCCCAAATTCCAGGATGTATTTACAATTGACTACATCTATACATTTTCCACAACGGAATATGTTTATTTCTTATCTGTGCAATGGGAGAGTCTAATGAAACCAAATGCGAAGTTGCAGACTCATCTTGGGCGTCTGCCGATTAAGGACAGCGAGCTTTGGATGTACAGGGAAATTATTCTTGAGTGCCGCTTCGAGCCCAAACGCAGGAGAAGGAGCTTCAGGGATGTTGTTTATAATTCGGTTCAAGCTGCTCACTTCAGTACAGCTGGCAAAGAGCTTGCTGATGATCTGGGAGTGAGGATAGACAGCCCGATACTGTATGGAGTGTTCGCTGTGACGGATCAAAAGGGCAATCCAATGAGACAGTCTGCCTTGTGCGCTTTTCCATTGGACTATGTGAACAGTGCCATTGAAAAGGGGGTAGACGCCTGCTGTTCAAGTTTGACAGAGCAGATCTCAAGGGGATTGTGCCATTTCCAGCCCTGTGAAATGTGTCCAGTTGAGaATTCAGACAGTTTGACTTGCAAAACTACTCCCACCATGGTATCAAAGCCTTACTACAGAGTGGACTTCTTCAATGGGCAGATGAGCAATGTGCTCTTCACCTCTATTCTGGTCACCACCATTGAGACCAAAACTGTGGCCCACATCGGCACAGATCACGGAAGACTTCTGCAGATCATTCTGAGCAGATCAATCCCTGTAGTGTTTGCCAACTACTCTCTTGTTGAAGATGCACAGAAAGTGTCACGGATAGCCGCCATTCATTCATCATTAGAATCACTGCTCTTTGTTGTCGGAAACAAGCTAATAAACGTGTCTCCCAGAGGCCCAGGCTGTAGCCATTTCCTAAACTGCTCAGCGTGTTTAGCAGCCCCGAGGTTTATGGGATGTGGCTGGTGTGGTGAAGTCTGTTCCCAACAGCATCAGTGTGAAGATCAGTGGAGCGGCGACTCCTGCCCTCCTGTTATCACCCAGtttttcccCAGGACGGTGCCTTCAAATGGGACGAGTGAACTTATTCTTTGCGGCTGGAATTTCCAGTCAGCTTCCCGTCCTGCTATCACTCAAGAGTCTCATCAGGTCAGAGTGGGAAACAGCGACTGTACAGTTGTACCAGAGAAAACAAGTAGCTCTCTGCTGGTTTGTAGGATTGTTGGAGAGGAATCAGGCCTGCATCAAAGTGTTAACATAACAATCCAAGTTAATGAAAAAAAAGCGGGAAGTGGATACTTCATCTCTGGGAAGGCTGGCATTCAAGGCTTCAGCTTTGTGACTCCAGAAATCACAGATATCAGTCCAAGCTTTGGACCCAAGATTGGAGGAACCCTGATCACCCTGTCTGGAAAGCATCTGGATGCAGGTGGATCCAGAACGATCAGCCTTGGAGACAGAAATTGCCCTGTTGAAAGCGTCTCCAGTGATGGGACTTCTATTGTTTGCCGGTCTGAAGGTGTGAAGGATACTTTAGAAGTGGATGTGAAGGTTGTAATTGATGGATCGACTATTTCCTCCACAAAAACATTCAGCTACAGGGTGAATCCCGAGGTGACGGGTGTAAACCCCAACTGTGGTTTTAGAAGAGGATCAAAAATTATCATCACCGGGCAGAATTTGGACTCTGTTTCCCAAGCCGTCATTAAATACAAAGGCGGCTACAAAGACCCTGTGGAAACCGTGTGTTCTGGTCAAGGAAACCCCACGCAGATGGAGTGTATGAGCCCTGTATGTGAGGAGTCAACAGGAATCCTCTCTGTAGATCTGGATGGAGCCAAAGATCTCCAGTCTCAGACTTTTACATGCCATGCTAATGGAGAACCCATCCCATTTGAAACAGAGGACCGAGTGCTGGAGCTCAGCCCAGGCCAGGATGAAGTCTCTCTGCACCACAAGAAACTGGCTCTGGTGTCGGGCTGCATGGAAATCATCATGACAGTTAATGGCGTGGATTGCAATGCTAAAGTTCTGGACAATGAGATCACTTGCAGGATCCCCAAAAATCTGACTATCCCCCGCCAAGGGGCACCAGTCAAGGTGTTAGTGAATAGAGAAGAGCATGACATCGGTATGGTTGTAATGAAGAACAGCAACTTAATTGTGGGCGTGGTGCTGGGCATCTTAGCTGCAGTTGGTGTAGGAGCAGCTATTGTCTATGTTGCGATGGCTCAAGAGCGAAAGAAAAAGAAAGCTGCACTTGTTGAGGTTCGACTGTCCATGCATTCAAATCGCACCACAGCAGAGAATTACGACAGATCACCTGATGGCGACTACAGAAGGGGTCTGTCAGTTTCTCCATTTCATGGCTCGGGCACCACATTCACCAGTCTGCCGTATGCCGGCTCTATGGACTCTGCAGCAGCTCCTCTGATGCGCCGTCAGGTCTCCATGTCTGCTCTCCGGCCAGATCTGCTGGAGGAGGTCAAGAATGTTTTAATCTCACCCGATAAGATCAAAATCCAGCATGAACAAATCATTGGCAAAGGTCATTTTGGGACAGTGTATCATGGATATCTTACTGATAGTGATAACAAAGAGACCCACTGTGCAGTCAAATCACTGAATAGGATCACCGATCTGGAGGAGGTGGAGCAGTTTTTAAGAGAGGGACTCTTTATGAAGGCCTTCCACCATTCTCACGTCCTGTCACTTTTGGGCATTGTGCTTCCCAGCGATGGACTTCCTCTGGTTATCCTGCCGTATATGAAACACGGTGATCTCCGGCATTTCATCCGCTCTCCAGAAAGGAGTCCCACAGTGAAGGATCTGATTGGCTTCGGGCTTCAAGTAGCCAAAGGAATGGAGTATCTTGCAAACAAGAAGTTTGTGCACAGAGATCTTGCTGCACGCAACTGCATGCTGGACGAGTCATTTACAGTGAAGGTGGCTGACTTTGGCATGGCACGTGATGTCTATGATAAGGAATACTACAGCATCCAGGACAGCAAGAAAGCGAAGCTGCCAGTCAAATGGATGGCTTTAGAAAGCCTGCAGACACAGAAATTCACCACCAAATCAGATGTGTGGTCTTATGGAGTGTTGATGTGGGAGTTGTTGACGAGAGGAGCCAGTCCATATCCTGATGTGGACCCTTATGACATCACGCCTTATTTGATGCAAGGCCGTCGACTACCACAACCGCAGTATTGCTTTGATTCCCTCTGGTCAGTTCTGATGCAGTGCTGGCATCCTGAGCCCGAGAAGAGGCCGGGTTTCACTACACTCGTGCAGGCCGTTCAGGACATCCATTCCAGCCTGGACGGGGAGCATTACATCAACCTCCAGATCACCTATGTGAATCTAGACCAGCCTCGACCGTACCCGTCACTGTGTCCTGCTACACCCGCACACTCAGACCAGTCCTCCACCTGACGAGGAGCATGCACTGAACATCAGCTGCTGGATTTAATGAAGAATCCCAAAAGACGATCCACTATTCTGTGTGTGCATTTTGTGAACTCAGGTCTTTTGGGATTTTAAGCGTTTGGGGAAGTGCACTCCTTAAATGAATGTCTTTGATCAGGTTTTTATACGTTTTTAAACACGTGGAATTGTTTCTTACTCTAGATAATGGAAATTGCTCATGCTTACAGTTTTTAACACTGTCCAGACACAATCCAATAGGATTTCTCAGAAACAAGCAATTTTTACGTCCaactgcactgttaaaaatgaaatgccaCATTGTAAAGAAATTCTTGttgcctttatttttttaagttgaatcaaatgaactt

Function

symbol description
mst1ra Predicted to enable transmembrane receptor protein tyrosine kinase activity. Predicted to be involved in several processes, including phagocytosis; positive regulation of kinase activity; and positive regulation of protein kinase B signaling. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in basal plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in gill and intestine. Human ortholog(s) of this gene implicated in nasopharynx carcinoma. Orthologous to human MST1R (macrophage stimulating 1 receptor).

GO:

id name namespace
GO:0006909 phagocytosis biological_process
GO:0033674 positive regulation of kinase activity biological_process
GO:0016477 cell migration biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0051897 positive regulation of protein kinase B signaling biological_process
GO:0007399 nervous system development biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0009925 basal plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071218-2 Predicted to enable transmembrane receptor protein tyrosine kinase activity. Predicted to be involved in several processes, including phagocytosis; positive regulation of kinase activity; and positive regulation of protein kinase B signaling. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in basal plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in gill and intestine. Human ortholog(s) of this gene implicated in nasopharynx carcinoma. Orthologous to human MST1R (macrophage stimulating 1 receptor).

Ensembl:

ensembl_id ENSDARG00000060235

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063017 True 4722 mRNA 0.46 21 42475730 42505007

Neighbor

gene id symbol gene type direction distance location
XLOC_032268 BX957236.1 coding upstream 92284 42383194 ~ 42383446 (+)
XLOC_032267 gpx1b coding upstream 134511 42338309 ~ 42341219 (+)
XLOC_032266 CU694444.1 coding upstream 312956 42162650 ~ 42162774 (+)
XLOC_032265 BX664752.1 coding upstream 477634 41997963 ~ 41998096 (+)
XLOC_032264 oxtr coding upstream 501525 41956355 ~ 41974205 (+)
XLOC_032270 camkva coding downstream 40790 42545797 ~ 42598328 (+)
XLOC_032271 NA coding downstream 99234 42604241 ~ 42610935 (+)
XLOC_032272 BX005129.4 coding downstream 113895 42618902 ~ 42622652 (+)
XLOC_032273 BX005129.5 coding downstream 130953 42635960 ~ 42643033 (+)
XLOC_032274 BX005129.3 coding downstream 141404 42646411 ~ 42653425 (+)
XLOC_032263 NA non-coding upstream 560717 41896384 ~ 41915013 (+)
XLOC_032261 NA non-coding upstream 687316 41779149 ~ 41788414 (+)
XLOC_032275 NA non-coding downstream 151706 42656713 ~ 42666008 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_10731548_10747121 MST1RA coding CI01000340 null 10730673 ~ 10747648 (+)