G1329667


Basic Information

Item Value
gene id G1329667
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80137307 ~ 80139417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1519282
tggactagacacactgtaacccagagacacacctggactagacacacttggactagacacacctggactagacacacctggactagacacacctggactagacacactgtAACCCAGAGACGTACATGTGACCGTTGAAATGTTTTATTTGCATGCGTTGTGTAGCAACACACATTTTTAGTTGTAAAATATGGTTGTGATTATTACTGTGAAAGTCCACTGGGCTCCACTGTCTTGCTCCTAGCAGACACGAGACTTGTTGAATGACCCATATCCATTCATCTTGTCGTTGGGGGGGTTCAGTAACATTCCGTCTAGATTGAATACTGCTGCTATAGTTTGAGTTGAAAGACGACAGGGAAGCAGGCTGATGTTTTATACTGTGGGTTCTTCTGGTTGTGGACAAGAGGAGACCTTTTAATTAAAGTGTGGTAGACTAGTATGACGAGGGACTGTGTTTTTTTCCCCACCTGCTCTCTGTTCAGCTCCCTCGAGGATAACTTGAGGAGTTCAACCGTGTTTTCAAAGGGGTGTGTCGATGAGGGTTCATTTCAAATGGCTCCctgttccctatctagtgcaccatagggccctggtctaaagtagtgcactatgtagggaatagggtcccccccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggtccccccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggttcccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggttccccccatagggccctggtctaaagtagtgcactatgtagggaatagggagccattttatCCGCAGGCCCTTTATGTTAATGCAAGACTGGGTCAGTTTTAGCAGATAATCTGAGAACTAGATaaaccctcccctccccaacAGCATCTAGTTAGTTCTCACCTTTCACTGCCTAaacctagtgttgtctgtctgtgtgtttctactGAATGTTTGTTcacatctttttttttctttctttgtaAGACTGTATTTATTGTAAAAGATAAATGGGAATATGTTGTGCTGGAGTGAGATTCATTATTTTACCTGTCTGAGTAAATGGACTCcaactcccttctctccctcgtGGAATTACACTCACTCAAAATGGCCGCCGGTTCACCCACAACTGTCTCGAAAGGGAATGTCTGCTTCAGTAATTGTCTTTCTTTGAGAATGTGTCTCCCTTCACAGCCTCTCAGAGGCATTATAGATATATATTTCTAGAGCTGCTCAAAAGAAGCACACCATTTTGGATGCAGGGAGAGGGCCTGTAAGGTCACACAGTCTGTTTTCCACAAGGCATCATCAGTTGGTGTGAAAGGATGCTCTTTCCTTCGTCTCTAGGTTTGGTTGTTTCCAAGTGTCCTTTTTGTCTGTCGCTGAGGTGAGGCAATGCAGCCGTCGCCTGTCTGAAACATTTTGTAGTCATTGATTTAACATGGGGAATAAATTCATCAACAATTCAA
>TU1519285
tggactagacacactgtaacccagagacacacctggactagacacacttggactagacacacctggactagacacacctggactagacacacctggactagacacactgtAACCCAGAGACGTACATGTGACCGTTGAAATGTTTTATTTGCATGCGTTGTGTAGCAACACACATTTTTAGTTGTAAAATATGGTTGTGATTATTACTGTGAAAGTCCACTGGGCTCCACTGTCTTGCTCCTAGCAGACACGAGACTTGTTGAATGACCCATATCCATTCATCTTGTCGTTGGGGGGGTTCAGTAACATTCCGTCTAGATTGAATACTGCTGCTATAGTTTGAGTTGAAAGACGACAGGGAAGCAGGCTGATGTTTTATACTGTGGGTTCTTCTGGTTGTGGACAAGAGGAGACCTTTTAATTAAAGTGTGGTAGACTAGTATGACGAGGGACTGTGTTTTTTTCCCCACCTGCTCTCTGTTCAGCTCCCTCGAGGATAACTTGAGGAGTTCAACCGTGTTTTCAAAGGGGTGTGTCGATGAGGGTTCATTTCAAATGGCTCCctgttccctatctagtgcaccatagggccctggtctaaagtagtgcactatgtagggaatagggtcccccccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggtccccccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggttcccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggttccccccatagggccctggtctaaagtagtgcactatgtagggaatagggagccattttatCCGCAGGCCCTTTATGTTAATGCAAGACTGGGTCAGTTTTAGCAGATAATCTGAGAACTAGATaaaccctcccctccccaacAGCATCTAGTTAGTTCTCACCTTTCACTGCCTAaacctagtgttgtctgtctgtgtgtttctactGAATGTTTGTTcacatctttttttttctttctttgtaAGACTGTATTTATTGTAAAAGATAAATGGGAATATGTTGTGCTGGAGTGAGATTCATTATTTTACCTGTCTGAGTAAATGGACTCCTTCTGCCTCGTGGAATTACACTCACTCAAAATGGCCGCCGGGTTCACCCATAACTGTGTACCTGTCTGAGTAAATGGACTCCATCTGCCTCGTGGAATTACACTCACTCAAAATGGCCGCCGGGTTCACCCATAACTGTGTACCTGTCTGAGTAAATGGACTCCATCTCCCTCGTGGAATTACACTCACTCAAAATGGCCGCCGGGTTCACCCATAACTGTGTACCTGTCTGAGTAAATGGACTCCAACTCCCTTCTCTCCCTCGTGGAATTACACTCACTCAAAATGGCCGCCGGGTTCACCCATAACTGTGTACCTGTCTGAGTAAATGGACTCcaactcccttctctccctcgtGGAATTACACTCACTCAAAATGGCCGCCGGTTCACCCACAACTGTCTCGAAAGGGAATGTCTGCTTCAGTAATTGTCTTTCTTTGAGAATGTGTCTCCCTTCACAGCCTCTCAGAGGCATTATAGATATATATTTCTAGAGCTGCTCAAAAGAAGCACACCATTTTGGATGCAGGGAGAGGGCCTGTAAGGTCACACAGTCTGTTTTCCACAAGGCATCATCAGTTGGTGTGAAAGGATGCTCTTTCCTTCGTCTCTAGGTTTGGTTGTTTCCAAGTGTCCTTTTTGTCTGTCGCTGAGGTGAGGCAATGCAGCCGTCGCCTGTCTGAAACATTTTGTAGTCATTGATTTAACATGGGGAATAAATTCATCAACAATTCAA
>TU1519286
tggactagacacactgtaacccagagacacacctggactagacacacttggactagacacacctggactagacacacctggactagacacacctggactagacacactgtAACCCAGAGACGTACATGTGACCGTTGAAATGTTTTATTTGCATGCGTTGTGTAGCAACACACATTTTTAGTTGTAAAATATGGTTGTGATTATTACTGTGAAAGTCCACTGGGCTCCACTGTCTTGCTCCTAGCAGACACGAGACTTGTTGAATGACCCATATCCATTCATCTTGTCGTTGGGGGGGTTCAGTAACATTCCGTCTAGATTGAATACTGCTGCTATAGTTTGAGTTGAAAGACGACAGGGAAGCAGGCTGATGTTTTATACTGTGGGTTCTTCTGGTTGTGGACAAGAGGAGACCTTTTAATTAAAGTGTGGTAGACTAGTATGACGAGGGACTGTGTTTTTTTCCCCACCTGCTCTCTGTTCAGCTCCCTCGAGGATAACTTGAGGAGTTCAACCGTGTTTTCAAAGGGGTGTGTCGATGAGGGTTCATTTCAAATGGCTCCctgttccctatctagtgcaccatagggccctggtctaaagtagtgcactatgtagggaatagggtcccccccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggtccccccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggttcccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggttccccccatagggccctggtctaaagtagtgcactatgtagggaatagggagccattttatCCGCAGGCCCTTTATGTTAATGCAAGACTGGGTCAGTTTTAGCAGATAATCTGAGAACTAGATaaaccctcccctccccaacAGCATCTAGTTAGTTCTCACCTTTCACTGCCTAaacctagtgttgtctgtctgtgtgtttctactGAATGTTTGTTcacatctttttttttctttctttgtaAGACTGTATTTATTGTAAAAGATAAATGGGAATATGTTGTGCTGGAGTGAGATTCATTATTTTACCTGTCTGAGTAAATGGACTCCATCTCCCTCGTGGAATTACACTCACTCAAAATGGCCGCCGGGTTCACCCATAACTGTGTACCTGTCTGAGTAAATGGACTCCAACTCCCTTCTCTCCATCGTGGAATTACACTCACTCAAAATGGCCGCCGGTTCACCCATAACTGTGTACCTGTCTGAGTAAATGGACTCCAACTCCCTCGTGGAATTACACTCACTCAAAATGGCCGCCGGGTTCACCCATAACTGTGTACCTGTCTGAGTAAATGGACTCCATCTCCCTCGTGGAATTACACTCACTCAAAATGGCCGCCGGGTTCACCCATAACTGTGTACCTGTCTGAGTAAATGGACTCcaactcccttctctccctcgtGGAATTACACTCACTCAAAATGGCCGCCGGTTCACCCACAACTGTCTCGAAAGGGAATGTCTGCTTCAGTAATTGTCTTTCTTTGAGAATGTGTCTCCCTTCACAGCCTCTCAGAGGCATTATAGATATATATTTCTAGAGCTGCTCAAAAGAAGCACACCATTTTGGATGCAGGGAGAGGGCCTGTAAGGTCACACAGTCTGTTTTCCACAAGGCATCATCAGTTGGTGTGAAAGGATGCTCTTTCCTTCGTCTCTAGGTTTGGTTGTTTCCAAGTGTCCTTTTTGTCTGTCGCTGAGGTGAGGCAATGCAGCCGTCGCCTGTCTGAAACATTTTGTAGTCATTGATTTAACATGGGGAATAAATTCATCAACAATTCAA
>TU1519287
tggactagacacactgtaacccagagacacacctggactagacacacttggactagacacacctggactagacacacctggactagacacacctggactagacacactgtAACCCAGAGACGTACATGTGACCGTTGAAATGTTTTATTTGCATGCGTTGTGTAGCAACACACATTTTTAGTTGTAAAATATGGTTGTGATTATTACTGTGAAAGTCCACTGGGCTCCACTGTCTTGCTCCTAGCAGACACGAGACTTGTTGAATGACCCATATCCATTCATCTTGTCGTTGGGGGGGTTCAGTAACATTCCGTCTAGATTGAATACTGCTGCTATAGTTTGAGTTGAAAGACGACAGGGAAGCAGGCTGATGTTTTATACTGTGGGTTCTTCTGGTTGTGGACAAGAGGAGACCTTTTAATTAAAGTGTGGTAGACTAGTATGACGAGGGACTGTGTTTTTTTCCCCACCTGCTCTCTGTTCAGCTCCCTCGAGGATAACTTGAGGAGTTCAACCGTGTTTTCAAAGGGGTGTGTCGATGAGGGTTCATTTCAAATGGCTCCctgttccctatctagtgcaccatagggccctggtctaaagtagtgcactatgtagggaatagggtcccccccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggtccccccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggttcccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggttccccccatagggccctggtctaaagtagtgcactatgtagggaatagggagccattttatCCGCAGGCCCTTTATGTTAATGCAAGACTGGGTCAGTTTTAGCAGATAATCTGAGAACTAGATaaaccctcccctccccaacAGCATCTAGTTAGTTCTCACCTTTCACTGCCTAaacctagtgttgtctgtctgtgtgtttctactGAATGTTTGTTcacatctttttttttctttctttgtaAGACTGTATTTATTGTAAAAGATAAATGGGAATATGTTGTGCTGGAGTGAGATTCATTATTTTACCTGTCTGAGTAAATGGACTCCTTCTGCCTCGTGGAATTACACTCACTCAAAATGGCCGCCGGGTTCACCCATAACTGTGTACCTGTCTGAGTAAATGGACTCCATCTGCCTCGTGGAATTACACTCACTCAAAATGGCCGCCGGGTTCACCCACAACTGTCTCGAAAGGGAATGTCTGCTTCAGTAATTGTCTTTCTTTGAGAATGTGTCTCCCTTCACAGCCTCTCAGAGGCATTATAGATATATATTTCTAGAGCTGCTCAAAAGAAGCACACCATTTTGGATGCAGGGAGAGGGCCTGTAAGGTCACACAGTCTGTTTTCCACAAGGCATCATCAGTTGGTGTGAAAGGATGCTCTTTCCTTCGTCTCTAGGTTTGGTTGTTTCCAAGTGTCCTTTTTGTCTGTCGCTGAGGTGAGGCAATGCAGCCGTCGCCTGTCTGAAACATTTTGTAGTCATTGATTTAACATGGGGAATAAATTCATCAACAATTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1519282 False 1521 lncRNA 0.45 2 80137307 80139417
TU1519285 False 1858 lncRNA 0.46 2 80137307 80139417
TU1519286 False 1857 lncRNA 0.46 3 80137307 80139417
TU1519287 True 1595 lncRNA 0.46 2 80137307 80139417
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118936540 LOC106591976 coding upstream 3608 80109080 ~ 80133699 (+)
LOC110511598 LOC106595231 coding upstream 256937 79839398 ~ 79880370 (+)
LOC118938878 NA coding upstream 416335 79718876 ~ 79720972 (+)
LOC118938875 NA coding upstream 523564 79608818 ~ 79640460 (+)
LOC118938872 large1 coding upstream 844274 79148465 ~ 79293033 (+)
LOC110517730 LOC105026518 coding downstream 63723 80203140 ~ 80213290 (+)
LOC110517212 rtcb coding downstream 129527 80268944 ~ 80284094 (+)
LOC110516869 LOC106593275 coding downstream 208829 80348246 ~ 80354306 (+)
LOC118938966 NA coding downstream 209698 80349115 ~ 80349249 (+)
LOC118938906 NA coding downstream 590995 80730412 ~ 80731335 (+)
G1329662 NA non-coding upstream 28736 80108363 ~ 80108571 (+)
G1329660 NA non-coding upstream 34391 80102716 ~ 80102916 (+)
G1329307 NA non-coding upstream 57363 80079409 ~ 80079944 (+)
G1329298 NA non-coding upstream 69336 80066687 ~ 80067971 (+)
G1329292 NA non-coding upstream 87532 80049378 ~ 80049775 (+)
G1329674 NA non-coding downstream 3192 80142609 ~ 80143393 (+)
G1329676 NA non-coding downstream 5645 80145062 ~ 80147669 (+)
G1329678 NA non-coding downstream 9256 80148673 ~ 80149143 (+)
G1329679 NA non-coding downstream 10213 80149630 ~ 80152097 (+)
G1329680 LOC106591974 non-coding downstream 12940 80152357 ~ 80153962 (+)
G1329273 NA other upstream 151356 79985593 ~ 79985951 (+)
G1329160 NA other upstream 469652 79664957 ~ 79667655 (+)
G1329159 NA other upstream 472575 79663914 ~ 79664732 (+)
G1329153 LOC106593057 other upstream 515356 79618397 ~ 79621951 (+)
G1328968 NA other upstream 1097850 79038604 ~ 79039457 (+)
G1329827 NA other downstream 279047 80418464 ~ 80419259 (+)
G1329865 NA other downstream 350431 80489848 ~ 80490772 (+)
G1330026 NA other downstream 709926 80849343 ~ 80869367 (+)
tbk1 tbk1 other downstream 842767 80970502 ~ 81033922 (+)
G1330089 NA other downstream 873112 81012529 ~ 81013102 (+)

Expression

G1329667 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
End of interactive chart.

G1329667 Expression in each Bioproject

Bar chart with 21 bars.
G1329667 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network