G1329754


Basic Information

Item Value
gene id G1329754
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80235291 ~ 80243096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1519409
cctccccaaCAACCCCTTCCCCTTCTACCCGCCTGGCATCATCGGTGGGGAGTACGACCAGAGACCTGGCATCCCCGGTGGTATTCTGCCCCGCCCCCGCTACGACCCTATTGGTCCGCTCCCGGGTCACGATCCCACAGCAGGAGGGCTGATTGGACGAAGGGGGCTGAGACCTGCTGGGAACCGGCCGGCTGACATCAGAAGAGGGTTCATATGACCTCCCTGACCAGTGACCTCTAGTGGTGGTGTAGGAGTATGACCACCACACAGAGAAGCTTAAATAAAACAGAGATGTTGAAGACTGACTGATTAGCCTACCTTAAATAAGGTGCTATAGTCACAGATAAATGCCGTTGTTCGGTCTATAAACACTAACCCTCACCCAGCCTGCTTATTATCCCCTAAACCTCATCCAGGTGTTTTTTATAAACCCTATCCTTGACCCAGAATCAGCTTTTAATAGCTCATGTTCTCCCGTGTGTGTTTAGTAAGTGATGAGGTCAGATCATACCGATCTGCTATCTTCATTTGATCTCTCTGTTGTTGCAGAGAATGTtgctgcacagcaggaaatgtaaACTTCTAAAAGTTTTCCCGTGAGAAACCGGTCAAATTTAAGATAGTAGATCTGTAAGGGTGTCTGGGGGATTGAGGTGGCCGTTTCGATCTTCCACCATTCACTATGAAGAcattttgtacttgtttcctcgcAGACGAAAAGCTGTAAATAAAATGAGAAAATGGCAA
>TU1519410
cctccccaaCAACCCCTTCCCCTTCTACCCGCCTGGCATCATCGGTGGGGAGTACGACCAGAGACCTGGCATCCCCGGTGGTATTCTGCCCCGCCCCCGCTACGACCCTATTGGTCCGCTCCCGGGTCACGATCCCACAGCAGGAGGGCTGATTGGACGAAGGGGGCTGAGACCTGCTGGGAACCGGCCGGCTGACATCAGAAGAGGGTTCATATGACCTCCCTGACCAGTGACCTCTAGTGGTGGTGTAGGAGTATGACCACCACACAGAGAAGCTTAAATAAAACAGAGATGTTGAAGACTGACTGATTAGCCTACCTTAAATAAGGTGCTATAGTCACAGATAAATGGCGTTGTTCGGTCTATAAACACTAACCCTCACCCAGCCTGCTTATTATCCCCTAAACCTCATCCAGGTGTTTTTTATAAACCCTATCCTTGACCCAGAATCAGCTTTTAATAGCTCatgttctcctgtgtgtgtttagtaAGTGATGAGGTCAGATCATACCGATCTGCTATCTTCATTTGATCTCTCTGTTGGAAATGTAAAGTTTTCCCGTGAGAAACCGGTCAAATTTAAGATAGTAGATCTGTAAGGGTGCCTGGGGGATTGAGGTGGCCGTTTCGATCTTCCACCATTCACTATGAAGAcattttgtacttgtttcctcgcAGACGAAAAGCTGTAAATAAAATGAGAAAATGGCAA
>TU1519411
cctccccaaCAACCCCTTCCCCTTCTACCCGCCTGGCATCATCGGTGGGGAGTACGACCAGAGACCTGGCATCCCCGGTGGTATTCTGCCCCGCCCCCGCTACGACCCTATTGGTCCGCTCCCGGGTCACGATCCCACAGCAGGAGGGCTGATTGGACGAAGGGGGCTGAGACCTGCTGGGAACCGGCCGGCTGACATCAGAAGAGGGTTCATATGACCTCCCTGACCAGTGACCTCTAGTGGTGGTGTAGGAGTATGACCACCACACAGAGAAGCTTAAATAAAACAGAGATGTTGAAGACTGACTGATTAGCCTACCTTAAATAAGGTGCTATAGTCACAGATAAATGGCGTTGTTCGGTCTATAAACACTAACCCTCACCCAGCCTGCTTATTATCCCCTAAACCTCATCCAGGTGTTTTTTATAAACCCTATCCTTGACCCAGAATCAGCTTTTAATAGCTCatgttctcctgtgtgtgtttagtaAGTGATGAGGTCAGATCATACCGATCTGCTATCTTCATTTGATCTCTCTGTTGGAAATGTAAAGTTTTCCCGTGAGAAACCGGTCAAATTTAAGATAGTAGATCTGTAAGGGTGCCTGGGGGATTGAGGTGGCCGTTTCGATCTTCCACCATTCACTATGAAGAcattttgtacttgtttcctcgcAGACGAAAAGCTGTAAATAAAATGAGAAAATGGCAA
>TU1519412
cctccccaaCAACCCCTTCCCCTTCTACCCGCCTGGCATCATCGGTGGGGAGTACGACCAGAGACCTGGCATCCCCGGTGGTATTCTGCCCCGCCCCCGCTACGACCCTATTGGTCCGCTCCCGGGTCACGATCCCACAGCAGGAGGGCTGATTGGACGAAGGGGGCTGAGACCTGCTGGGAACCGGCCGGCTGACATCAGAAGAGGGTTCATATGACCTCCCTGACCAGTGACCTCTAGTGGTGGTGTAGGAGTATGACCACCACACAGAGAAGCTTAAATAAAACAGAGATGTTGAAGACTGACTGATTAGCCTACCTTAAATAAGGTGCTATAGTCACAGATAAATGGCGTTGTTCGGTCTATAAACACTAACCCTCACCCAGCCTGCTTATTATCCCCTAAACCTCATCCAGGTGTTTTTTATAAACCCTATCCTTGACCCAGAATCAGCTTTTAATAGCTCatgttctcctgtgtgtgtttagtaAGTGATGAGGTCAGATCATACCGATCTGCTATCTTCATTTGATCTCTCTGTTGGAAATGTAAAGTTTTCCCGTGAGAAACCGGTCAAATTTAAGATAGTAGATCTGTAAGGGTGCCTGGGGGATTGAGGTGGCCGTTTCGATCTTCCACCATTCACTATGAAGAcattttgtacttgtttcctcgcAGACGAAAAGCTGTAAATAAAATGAGAAAATGGCAA
>TU1519413
cctccccaaCAACCCCTTCCCCTTCTACCCGCCTGGCATCATCGGTGGGGAGTACGACCAGAGACCTGGCATCCCCGGTGGTATTCTGCCCCGCCCCCGCTACGACCCTATTGGTCCGCTCCCGGGTCACGATCCCACAGCAGGAGGGCTGATTGGACGAAGGGGGCTGAGACCTGCTGGGAACCGGCCGGCTGACATCAGAAGAGGGTTCATATGACCTCCCTGACCAGTGACCTCTAGTGGTGGTGTAGGAGTATGACCACCACACAGAGAAGCTTAAATAAAACAGAGATGTTGAAGACTGACTGATTAGCCTACCTTAAATAAGGTGCTATAGTCACAGATAAATGCCGTTGTTCGGTCTATAAACACTAACCCTCACCCAGCCTGCTTATTATCCCCTAAACCTCATCCAGGTGTTTTTTATAAACCCTATCCTTGACCCAGAATCAGCTTTTAATAGCTCATGTTCTCCCGTGTGTGTTTAGTAAGTGATGAGGTCAGATCATACCGATCTGCTATCTTCATTTGATCTCTCTGTTGGAAATGTAAAGTTTTCCCGTGAGAAACCGGTCAAATTTAAGATAGTAGATCTGTAAGGGTGCCTGGGGGATTGAGGTGGCCGTTTCGATCTTCCACCATTCACTATGAAGAcattttgtacttgtttcctcgcAGACGAAAAGCTGTAAATAAAATGAGAAAATGGCAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1519409 False 747 lncRNA 0.48 2 80235291 80243096
TU1519410 False 712 lncRNA 0.48 2 80235291 80243096
TU1519411 False 712 lncRNA 0.48 2 80235291 80243096
TU1519412 False 712 lncRNA 0.48 2 80235291 80243096
TU1519413 True 712 lncRNA 0.49 2 80235291 80243096

Neighbor

gene id symbol gene type direction distance location
LOC110510397 LOC106596262 coding downstream 3633 80151017 ~ 80231658 (-)
LOC118938880 NA coding downstream 11023 80223008 ~ 80224268 (-)
LOC118938879 LOC106591974 coding downstream 81593 80152103 ~ 80153698 (-)
LOC110510850 NA coding downstream 95860 80133088 ~ 80139431 (-)
LOC110510401 LOC106592932 coding downstream 150885 79910682 ~ 80084406 (-)
LOC110516867 LOC106594631 coding upstream 43865 80286961 ~ 80347887 (-)
LOC110516866 NA coding upstream 126213 80369309 ~ 80370531 (-)
LOC118936542 LOC106592443 coding upstream 127471 80370567 ~ 80391741 (-)
LOC110515349 crbl2 coding upstream 874100 81117196 ~ 81119754 (-)
LOC118938883 NA coding upstream 955226 81196824 ~ 81199165 (-)
G1329783 NA non-coding downstream 2196 80232623 ~ 80233095 (-)
G1329780 NA non-coding downstream 12673 80222165 ~ 80222618 (-)
G1329779 NA non-coding downstream 34705 80200332 ~ 80200586 (-)
LOC110517959 LOC106593769 non-coding upstream 23292 80242189 ~ 80268839 (-)
G1329784 rtcb non-coding upstream 26942 80270038 ~ 80284078 (-)
G1329791 NA non-coding upstream 85374 80328470 ~ 80329067 (-)
G1329792 NA non-coding upstream 88866 80331962 ~ 80332326 (-)
G1329577 NA other downstream 354931 79879408 ~ 79880360 (-)
LOC118938876 NA other downstream 564145 79667754 ~ 79691305 (-)
G1329752 NA other upstream 105165 80348261 ~ 80354313 (-)
G1329798 NA other upstream 109607 80352703 ~ 80353641 (-)

Expression


Co-expression Network