G1329784 (rtcb)


Basic Information

Item Value
gene id G1329784
gene name rtcb
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80270038 ~ 80284078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1519471
tggtagtctacagggatgagggagtacctggtagtctacagggatgagggagtacctggtagtctacagggatgagggggtacctggtagtctacagggatgagggagtacctggtagtctacagggatgagggggtacctggtagtctacagggatgagaggttgtacctggtagtctacagggatgagaggaggtacctggtagtctacagggatgagggggtGGTGTGGAGGGAAGGCCCGGGTGGATCCCTTGCGATGCAGCAGTAGAGTCTTCTGTTTCCCATCTACCATGTGTTCCTCCACCTTGGCGATGTTATGAGACACGTCATAGATCACATGCATGTCCAGGTCATCAGGAGTGGTGGTGAACACCTTGGCAAACgcCTGTCGTGTGAGGAAGGTCATAGAGGAACGGTTGACCCAGGCATAGTTGCCGGCGGCGGCCATTCCTTTCAGGTAGTCTTGTCCCTCCTCTGAAAAGATACGGGCGCACGCCAGCTGACGATCGTTCACCTGGATCTTGTCTCGCTTCATCGCCTTCTCCATGGCAACCAGGGCATCTGTCGCCACCTGGTGGCCCAGCCCCCTGCTGCCACTGTGGATCATCACACACACCTGGCCCTTGTGGTCGATGCCCATCTTCTTAGCAGCATAGTCATTATAGATCTCATCCACCACCTGGATCTCAGCGTAGTGGTTCCCTGCCCCCAGAGTACCTAGCTGAGGCAGGCCTCTCTTCTTGGCCTTGGAGGAGACCTTGTTGGGGTCGGCCTGCAGCATCCTGCCATACTCCTCACAGTGCTCCTTATCCTCTGCCCAGGCATAGCCTTCTCTCAGGGACCAGTCCACTCCCATCTCTAGAGCCTCCTCTAGATCCTTGGCGGTCATAGGGATGACTCCCTTGGAGCCGACTCCTACAGGGATGTGGTCAAACAGGGCCTGAGCCAGCTGCTCCTTGACAGGCTGGACGTCTCCCTCGTCTAGGTTGGTCCTTAGTAGACGCACTCCACAGTTAATATCAAACCCCACACCAcctagctcacacacacacacacacacacggttaatgTCAAAACCCACA
>TU1519473
TGTCATCTTGTATTTTATTATCTCTGGTTAACCTGAATCTCAAGGTTATTTTCCACAGTGACTTTGCCATGAATGAAAAGTAAACCCAAGACACTTCACCCTCTCAAACTTTACAATATTAAAGAGCCCATCCGGTCCAATTAAATTGATCACTAAACGGACAAATCACCCCCCCATGCCAAAATAATCATACTGGTCATAAACAGGAAGTGGAGGAAACCGATCCCTTGTCAAGTCAGTCTATGAAGACGGACATGCTCACTCGCAGTCAGACACTTCCCCATTGGCTCCTCCGCCAGCTCTCTGCCTGGTGATTGGCTCCTGGAGGGAGTGCCATGGCCAATGCCGTCACTAGCAGAGCGGTGCAGCCTTATCCCTTGATCACAGCGATGGGTCGTAGTTTGATGGCTTTCTTGCTGATTCCAGCATCGTGACACGTGTTGACGACATCACACACGTTTTTGTACGACTCCGGAGCCTCCTCCATAACTAGTTTGGGCGAAGCCACCCTGATGGCGATACCCTTGTCTGCCAGCTTATCCAACACGTCCTGGAAGTCGATGTTCCTGCGGGATTTGGCCCGAGACAGAGCCCGACCCGCGCCGTGACAGGTGGTGCCGAAGGTCTCCGTCATGCCCTGTTCCGTGCCCGTCAGGACGTAACTGCAGGTGCCCATCGTGCCCCCGATCAACACCGGCTGGCCTGTCAGctggtagtctacagggatgagggggtGGTGTGGAGGGAAGGCCCGGGTGGATCCCTTGCGATGCAGCAGTAGAGTCTTCTGTTTCCCATCTACCATGTGTTCCTCCACCTTGGCGATGTTATGAGACACGTCATAGATCACATGCATGTCCAGGTCATCAGGAGTGGTGGTGAACACCTTGGCAAACgcCTGTCGTGTGAGGAAGGTCATAGAGGAACGGTTGACCCAGGCATAGTTGCCGGCGGCGGCCATTCCTTTCAGGTAGTCTTGTCCCTCCTCTGAAAAGATACGGGCGCACGCCAGCTGACGATCGTTCACCTGGATCTTGTCTCGCTTCATCGCCTTCTCCATGGCAACCAGGGCATCTGTCGCCACCTGGTGGCCCAGCCCCCTGCTGCCACTGTGGATCATCACACACACCTGGCCCTTGTGGTCGATGCCCATCTTCTTAGCAGCATAGTCATTATAGATCTCATCCACCACCTGGATCTCAGCGTAGTGGTTCCCTGCCCCCAGAGTACCTAGCTGAGGCAGGCCTCTCTTCTTGGCCTTGGAGGAGACCTTGTTGGGGTCGGCCTGCAGCATCCTGCCATACTCCTCACAGTGCTCCTTATCCTCTGCCCAGGCATAGCCTTCTCTCAGGGACCAGTCCACTCCCATCTCTAGAGCCTCCTCTAGATCCCTGTAACAGACACCAGGTTATCATCTATAGACAGCCTTCTCTCAGGGACCAGTCCCCTCCCATCTCTAGAGCCTCCTCTAGATCCCTGTAACAGACAGCCTTCTCTCAGGGACCAGTCCACTCCCATCTCTAGAGCCTCCTCTAGATCCCTGTaacaga
>TU1519472
CCCGTCTCAGGTAGGGTCAGTTACCCGTCTCAGGTAGGGTCAGTTACCCGTCTCAGGTAGGGTCAGTTACCCGTCTCAGGTAGGGTCAGTTACCTGTCTCAGGTAGGGTCAGATACCTGTCGTGTGAGGAAGGTCATAGAGGAACGGTTGACCCAGGCATAGTTGCCGGCGGCGGCCATTCCTTTCAGGTAGTCTTGTCCCTCCTCTGAAAAGATACGGGCGCACGCCAGCTGACGATCGTTCACCTGGATCTTGTCTCGCTTCATCGCCTTCTCCATGGCAACCAGGGCATCTACcagaacatatacagtaccagtcaaaagttgggacacctaattattcaagggttgttcttcagtggcttcaggaagtattcagaccccttgactttttccacattttgttacgtgacaaacttattctaaaatggattcaattgtccccccacaatctgcacacaatgccccataatgacaaagtaaaaaggtttttgctaatttataaaaaaaacaatatcacatttacctaagtattcagacccttaattcagtactttgttgcagCACCTTAGGCAGTAATTACaggctcgagtcttcttgggtatgaccctacaagcttggcac

Function

symbol description
rtcb Predicted to enable RNA ligase (ATP) activity. Predicted to be involved in tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytoplasm. Predicted to be part of tRNA-splicing ligase complex. Predicted to be active in nucleus. Orthologous to human RTCB (RNA 2',3'-cyclic phosphate and 5'-OH ligase).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1519471 False 1085 lncRNA 0.56 5 80270038 80278378
TU1519473 False 1550 lncRNA 0.54 8 80272485 80284078
TU1519472 True 623 lncRNA 0.47 2 80276068 80276713

Neighbor

gene id symbol gene type direction distance location
LOC110517959 LOC106593769 coding downstream 1199 80242189 ~ 80268839 (-)
LOC118938881 LOC106593769 coding downstream 28960 80235130 ~ 80241078 (-)
LOC110510397 LOC106596262 coding downstream 38380 80151017 ~ 80231658 (-)
LOC118938880 NA coding downstream 45770 80223008 ~ 80224268 (-)
LOC118938879 LOC106591974 coding downstream 116340 80152103 ~ 80153698 (-)
LOC110516867 LOC106594631 coding upstream 2883 80286961 ~ 80347887 (-)
LOC110516866 NA coding upstream 85231 80369309 ~ 80370531 (-)
LOC118936542 LOC106592443 coding upstream 86489 80370567 ~ 80391741 (-)
LOC110515349 crbl2 coding upstream 833118 81117196 ~ 81119754 (-)
LOC118938883 NA coding upstream 914244 81196824 ~ 81199165 (-)
G1329754 NA non-coding downstream 26942 80235291 ~ 80243096 (-)
G1329783 NA non-coding downstream 36943 80232623 ~ 80233095 (-)
G1329791 NA non-coding upstream 44392 80328470 ~ 80329067 (-)
G1329792 NA non-coding upstream 47884 80331962 ~ 80332326 (-)
G1329793 NA non-coding upstream 54452 80338530 ~ 80338762 (-)
G1329752 NA non-coding upstream 64183 80348261 ~ 80354313 (-)
LOC110510850 NA other downstream 130636 80133088 ~ 80139431 (-)
LOC110510401 LOC106592932 other downstream 312929 79910682 ~ 80084406 (-)
G1329577 NA other downstream 389678 79879408 ~ 79880360 (-)
G1329798 NA other upstream 68625 80352703 ~ 80353641 (-)
G1329894 NA other upstream 268156 80552234 ~ 80552485 (-)

Expression


Co-expression Network