XLOC_032276 (rbm6)


Basic Information

Item Value
gene id XLOC_032276
gene name rbm6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42666694 ~ 42690736 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063026
aaaccaaaaaacgaaaatccagccaaaatctcgttttttcgttttctcgtgagcaaaaggaaaaacggaaaaacggccgttttctccatttcctttattccgtttgaaaatggaaagcaaatgaacaaaacgtacacggaccaaAATAGTACAAATGAGCTCTTAGTTGAACAAAATTCTGGACTTCGTTTTACCCCATTCTTAAACGTCAACTCCCAAAAGCCCTCATTCGCCGGAAACGGGGATGTATCTTCCGCCTCTTTTTGTCGGAAACTCAGAAACAATCCTGCGGAAAGACCACTACAAGCTTGGACTTTCGGCTCTCGAAACTCGTGCAAAAGGGGGAGTTTCAAGGAGAGGAAGAGCACGATGTGGAACGGCTCAAGACCCGGCCCACGAGGAGGAATGCCCTTTCGTGGGGAACCTCTTGGTGGTATGTTTGAAGGCAGAGATGGTCCAAGGCCCGACTTCAGAGGTCGAGATGGCATGAATATGGACAGACCACCTATGGACATGAGGCGGTTCGACTGCCCACCTGATATGAGAGGACGAGACATGGGACTCTATGATAGAGGTAGAGAGCCTTCTCGAGAATTTTACAGGCCTGGCGATGAAATGGACATGCATTTTCGAAGGCGCTTTGAAATGGATCAGAGAAGCAACCTTCAGAATCCCCCAGGTTTCTTGGGTTCATCAAGGCTACCAATGGATTTGGACGGCCGAGACATGCAAGGTGGTAATTTGAGGGGTCCAGAAGATGGATTTATTAATATGAGGGAGAGGGAGAGATATCAAATGGATATGCCTGGCCTCCCCCCTGTAGACATCAGGAGGAGACTTGCCATCGTGGCTATGGGTGGAAATGAAGATTTTGGTGATATGAGAGACAGGGAAAGGTCACGCATGGGTGACATTGATGGATATAGTATGGACTTGCCTCCCAGAGACAGACCAATGATGGATTTTAACAGACGAGGCGTCACCCCTCCACTCAATCCAAGAGATATGTTTGAGTCTGATATGGATATGAGAAACCGTATGGGTTCCTCCTCTAATTTTAGGGATCAGCCTCCTATGTTTCATGACAATGATGGCCTTCCCATGGATATAAGAGGAAGATCTGATATTCCAGTGGGTCGTGGCAGCCCAGATCCCATGATCAGAGCTGACGAATTGACCCTCAGGGACAGAGAATTTCCAGAGCCAATGGACAGTCCAGTGACCTTCCGGGGGAGAGAAAGTGATTCTCTTTCAGATGAATGGCGTAAGCATGGTGTTAGAGACCGAGACTCTGTTCCACCAATGATGGGCAGAACGCCACAAAGAGACACTTATCAAAGAGACATGCAAGAGAAGTTCTTCCCTAACCACGGAAAAGATGTAGATCTTGGAGAACGGTCTCAGTTTAAGGAGAGAGACCGAGAGAGGCCTTCTGCTTATCTGGGGAAAGAGAGCACAGGCTTCAATCGATCAGAAAGAGAGCCCaaacaccaacactgggagaaaaaTACTCCCAGTGATTTCCCAAGTCGGGAACTGGGTACTCAGAAACCCCCTCCTATTCAAATGGATCCCACCCTAAATGTTCAAGGTAGAGAAGGTGAAAAGTCCTGGCCAGTTGACCGAGAAGAGAAGCCTGAGCGAACTGCACCAGCAGGAGGTAGACCTCCATATTTCCAAGACAAGAACTCGCCAAATCAAGAGCATCACTTCAAAAGCAATCGAGTGCCCTTTAAGGGATCTGGTGATAGGGCTTCAGATCAGGAACCACAGAGAGAAAGCTTAATGTCTGGGCCAAAGGAAATGCAGAGTAACAGAGGTGAGCAACTTGATCAAGATTATAGGGACATCGATTACCGCACAGGCTCTGGACGCAAATATGACTACAGTCTTGGGGATCTTCATGGACTTGAAAAAGATGTGAAGGAATCTAAACTAGTTCCAGTTGAAAGAGTGGATGACTCTGGTTCTCAGgACCAGGATTACAGGAGTGCAGGTGTCCAGGATAAAATCACAAACACTATTGCCATCTCTGGAATTCCTAAAAATGCCACAATGCAGCAGATTCTGGGAGCTTTTGCAGTTCGTGATGGTGTTCCAATGCAGGGCATGAAAATCAAAGATGTGGTGCCAGGTTACAGCTTCGATACGGCCTATGTGGAGTTTTTAAACCTCGAGGATGCTGTCCACTTCATGGAGTCCAACCAGGGATCTGTTAAGGTTGGTGACAAGACTGCTCTGCTTAAATATGTCCAATCTGACAAAAATGGGAAAGAGCAGCTCCATGAACCACCCACTAAGGCTACACCAGCTAGTGATGATGGTTTGTTACCAAATCCAGTCCCTCCACCAAACAAACAGGAGGAAACCGCTGTCAAGCCTCTACTGGATGCTGCTTCTCAAGGTGTGTGGCAGAGAAGCTCAAACTTGACTCCTGAAGCATGGCAACAGCAAGTGGACCAACAGCAACAACAGCAGGAACTGGAGCAACAACCCACAGAAGAATGGACCAATCAGAGAGCATCACGCCAAAACTTACAGTACTCTGATCCAGTTTTTAAAGAAAGCAAAACAATGATCATTAAGAACATTCTCCCTACCACCACCGTGGAGACCATTCTGAAAGCACTTGATCCATTTGCTTACCTGGATGAGCGCAATGTACGTTTGGTCAAAGGGAAATCACCTGGATCCAAATGCTTCTGCTTTGTTGATATGGATTCACATGAGCATGTGACACGGTTGGTGGAGCTGCTCACAAAGCCTCGGCCAATCATGATTGATGGGGTCAGAGTTTATGCTGAGGTTGCAAAGCCTTTGAAAAATCAAAATTATAGGAGGGACAATGAGAAGGCAAACACTTCTCTTCTGGGTCTGCCTCCAGATGTGATAAAGCAACAACCGTACCAGCAGCCGCAGCAGTTTTATCCCCAGCCTGTTCTTACAGCTGTGGGTGCTGCATCTATTCAAGGTGACCTAATAGGGGCAGATGCAACCTTGTCATCAGTAGCAGTGCCAAGTTCAAGCCTAACACagGGTGTGATGTATTCAAATAAATCTGCCATTGCACAAACAGTCCAGACTGCTGAGCAACAGGCTCCAGCTTTATCTGACGCTGCTGTATCTGGAGCTGCAGACTCCATTGACGGATATAACTACGGATCTGAAGCTCCAGATTTGTCAGCCTTCCTTTACGATGCTACATCTGGCTTTTACTATGACCCTCAGACTACGCTTTACTATGATCCCAACTCAAGGTATTTCTACGATGCTCAAAATCAGCAGTACCTGTATTGGGATAGTTCTTTAAAGACCTACATCCCAGTCCAGAGCTCTTCCACTGATGGTCAGAATGTTCCTGAAGTTCCGGCCCCTGAAGTTCCTGCTCCTGTGACTCCTGTTGCTGAGGTTATAGCTGTACCCATTAAAGAAGAGGAAGCCAAGGCGGTTTCAGAGGCTTTGCCAGAGGTGCGGGTGGAAGAGGAGCCTGGGCAACGTGgagaaaagagagagaaggaAAAAGAGGAAAAGCCCAGGAGTTTAGCAGCTTTTAAGATAATGAAAGACATGGAGAGATGGGCGAAAATCCAGAACAGTAAGAAAGAAAGTGTCCGAGCTCCTTCCCCTGTCCTCAAGTCTGGAGATGACCACAGACCTTCAAAGGCAGCTGATGCAGCCTTCGCCATCTTTGAAAGGAAGACTGGTGCAGATGAACTATTCAAGAAGCCTCTTGCTCCTCCAAAacaaaaagatgaaaaatcaTCAAAGCGGCCCATGGGTTCTCTGGGAATGTTGGCGGCCGATTATGGTGCAGGCAGTGACGAAGAGGAAGAAGAGAAACACGATAAGCAGGAAGCTTCACGGCCTGCGAAGAGCCAGCCGCAGGCGGACGAGAAGGAGGACAGGTTGACAGACTGGAAGAAGATGGCCTGTCTTCTGTGCAGAAGGCAATTCCCTAATAAAGACGCTCTAATTCGCCACCAGCAGCTCTCTGACCTCCATAAGCAAAATATGGAGATTCACCTGAAAATCAAACGTTCTAAGAGAGAACTTGAGGCTCTAGAAAACCAGGAAAAAGAGATGAAAACTAAAGCGCCAGGCAGCTCGCCTGAAGCAAAAAGAAGAAAGCCACAAAATACTTGGGCCGGCAGCTCAAGGGACAGTTTTAAAGGCAGCGAGAGACCAGGTTTGGGTTTAGAGACTACAGAGCGGAAGAAAAAAGAACCTGTCGTCTGGAATCATGCCACATATAAGCAGGCAGTTCGGAAGGCCATGTTTGCAAGATTCAATGAGTTGGACTGAGTGACAAGAATGAAGAAAAAGAGaatttgtgtataaatatatatatatacacacacacacatatacacacacagcacaaCAGTGTGGTGTGGTCTGTTGGCAGCTCATTCCAGGTTTTACTCTGAACTGATATAAAATTCCTGGAGAAGCTTATTGTGACTAACCGCGCATTCATGGATATGGTGAAGTGTGCCTGTATAAAGGAATTTATTCTTTCCTAGCAGCCAAACATTACTTTCGTGTTTAATCATCCTTTGTAGCTCTATTCTTCAgggctttttaaatattttctcatTTGATAACGTCGTATCATGTCTCCCCCcccccaaacttttttatttagtaaatgtatgTAAAGTTCATTTGTAAATTGAAATGTTTTGGGTTCAGCAGGTTGAATATTACTGTAGTGAGTCAATAAATTGTCTCAACATGACTGTAACCAC
>TCONS_00063027
aggACCAGGATTACAGGAGTGCAGGTGTCCAGGATAAAATCACAAACACTATTGCCATCTCTGGAATTCCTAAAAATGCCACAATGCAGCAGATTCTGGGAGCTTTTGCAGTTCGTGATGGTGTTCCAATGCAGGGCATGAAAATCAAAGATGTGGTGCCAGGGATCTGTTAAGGTTGGTGACAAGACTGCTCTGCTTAAATATGTCCAATCTGACAAAAATGGGAAAGAGCAGCTCCATGAACCACCCACTAAGGCTACACCAGCTAGTGATGATGGTTTGTTACCAAATCCAGTCCCTCCACCAAACAAACAGGAGGAAACCGCTGTCAAGCCTCTACTGGATGCTGCTTCTCAAGGTGTGTGGCAGAGAAGCTCAAACTTGACTCCTGAAGCATGGCAACAGCAAGTGGACCAACAGCAACAACAGCAGGAACTGGAGCAACAACCCACAGAAGAATGGACCAATCAGAGAGCATCACGCCAAAACTTACAGTACTCTGATCCAGTTTTTAAAGAAAGCAAAACAATGATCATTAAGAACATTCTCCCTACCACCACCGTGGAGACCATTCTGAAAGCACTTGATCCATTTGCTTACCTGGATGAGCGCAATGTACGTTTGGTCAAAGGGAAATCACCTGGATCCAAATGCTTCTGCTTTGTTGATATGGATTCACATGAGCATGTGACACGGTTGGTGGAGCTGCTCACAAAGCCTCGGCCAATCATGATTGATG

Function

symbol description
rbm6 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000077060

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063026 False 4748 mRNA 0.46 23 42666694 42690736
TCONS_00063027 True 739 processed_transcript 0.46 6 42674613 42680610

Neighbor

gene id symbol gene type direction distance location
XLOC_032275 NA coding upstream 686 42656713 ~ 42666008 (+)
XLOC_032274 BX005129.3 coding upstream 13269 42646411 ~ 42653425 (+)
XLOC_032273 BX005129.5 coding upstream 23661 42635960 ~ 42643033 (+)
XLOC_032272 BX005129.4 coding upstream 44042 42618902 ~ 42622652 (+)
XLOC_032271 NA coding upstream 55759 42604241 ~ 42610935 (+)
XLOC_032277 NA coding downstream 1886 42692622 ~ 42751759 (+)
XLOC_032278 sema3fa coding downstream 128227 42818963 ~ 42916343 (+)
XLOC_032279 gnat1 coding downstream 228197 42918933 ~ 42930302 (+)
XLOC_032280 tcta coding downstream 325180 43015916 ~ 43019222 (+)
XLOC_032281 arl6ip5a coding downstream 543477 43234213 ~ 43241631 (+)
XLOC_032282 NA non-coding downstream 651207 43341943 ~ 43347573 (+)
XLOC_032286 NA non-coding downstream 808244 43498980 ~ 43546988 (+)
XLOC_032287 NA non-coding downstream 906860 43597596 ~ 43601872 (+)
XLOC_032289 BX119974.1 non-coding downstream 1442232 44132968 ~ 44133082 (+)

Expression


Co-expression Network