G1329752


Basic Information

Item Value
gene id G1329752
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80348261 ~ 80354313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1519402
ATGAGCCCACCCCGTCCCCTGTGCTACCTACCAGACCACAGTAGACTGTCTCTCCGTTGGCCTTCTTCATCTTCCTCAGCTGGGAGACAAAGTACCAGAAGCGAGACTTGGCCACCACGTGGTTAGGAGCGAAGATCCTCATGCggtagagaggaggggtggggttcTTAACCGAGGGCAGGAGGCGCCCAACGACTTTGTACTCCCTAAGCTGTGTGGATGGAGTGTGCCAGACGCCTTCATGGTGTCTCGCTGACTGCGAACTGGGAAAGAGGAAGTAGTAGGGCGGAGACTCCGGATGTGAAGTACAAAAAGGGGCGGGATCCAACG
>TU1519403
AAATGGCTTCTTTTCTACAATTAGAATTTTTATTGTGCcgcacaaagtgaaaacagaggTTTTTTCCTTTAGAAGAAGGTGTTTGGTCTCTTGGTGGTGAAGCGGGGCTTGTGTTGGCGACGCAGGACCCTGTGGGGCAGGGGGAACTTGATCTtggagtcGTGGAACTGCTTGATGGCAGGTCTGCGGCATTTATTGGCAGCGATCTCCTGGACCTTCATGATGTGGATGGAGTGGGCACGGGCACGATGGCGAGCGCCCATATCACGATAGCACTGGGTGACTGCTGCAGAGGTGGTCAGGTCTCTGTATTCTCGGTACATGTTGTGGGTTCCGCTACGGGAGTCGTAACGCAACCAGATGCCAAAGTTCTTCACCTTCAGGGGAGTCTTCTCGTGCACCAGACCACAGTAGACTGTCTCTCCGTTGGCCTTCTTCATCTTCCTCAGCTGGGAGACAAAGTACCAGAAGCGAGACTTGGCCACCACGTGGTTAGGAGCGAAGATCCTCATGCggtagagaggaggggtggggttcTTAACCGAGGGCAGGAGGCGCCCAACGACTTTGTACTCCCTAAGTGTGCCAGACGCCTTCATGGTGTCTCGCTGACTGCGAACTGGGAAAGAGGAAGTAGTAGGGCGGAGACTCCGGATGTGAAGTACAAAAAGGGGCGGGATCCAACG
>TU1519406
ATGATATACGATGTGAGTTGACCTAGACCCGGTACCTCGGGTGGATGATATACGATGTGAGTTGACCTAGACCCGGTCCCTCGGGTGGATGTGAGAAGACTTACGTGGAACTGCTTGATGGCAGGTCTGCGGCATTTATTGGCAGCGATCTCCTGGACCTTCATGATGTGGATGGAGTGGGCACGGGCACGATGGCGAGCGCCCATATCACGATAGCACTGGGTGACTGCTGCAGAGGTGGTCAGGTCTCTGTATTCTCGGTACATGTTGTGGGTTCCGCTACGGGAGTCGTAACGCAACCAGATGCCAAAGTTCTTCACCTTCAGGGGAGTCTTCTCGTGCACCAGACCACAGTAGACTGTCTCTCCGTTGGCCTTCTTCATCTTCCTCAGCTGGGAGACAAAGTACCAGAAGCGAGACTTGGCCACCACGTGGTTAGGAGCGAAGATCCTCATGCggtagagaggaggggtggggttcTTAACCGAGGGCAGGAGGCGCCCAACGACTTTGTACTCCCTAAGTGTGCCAGACGCCTTCATGGTGTCTCGCTGACTGCGAACTGGGAAAGAGGAAGTAGTAGGGCGGAGACTCCGGATGTGAAGTACAAAAAGGGGCGGGATCCAACG
>TU1519405
AAATGGCTTCTTTTCTACAATTAGAATTTTTATTGTGCcgcacaaagtgaaaacagaggTTTTTTCCTTTAGAAGAAGGTGTTTGGTCTCTTGGTGGTGAAGCGGGGCTTGTGTTGGCGACGCAGGACCCTGTGGGGCAGGGGGAACTTGATCTtggagtGGAACTGCTTGATGGCAGGTCTGCGGCATTTATTGGCAGCGATCTCCTGGACCTTCATGATGTGGATGGAGTGGGCACGGGCACGATGGCGAGCGCCCATATCACGATCTGGAGAACACA

Function

NR:

description
PREDICTED: 60S ribosomal protein L18a-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1519402 False 330 lncRNA 0.57 2 80348261 80349586
TU1519403 False 686 TUCP 0.54 5 80348261 80354313
TU1519406 False 629 TUCP 0.55 5 80348261 80352385
TU1519405 True 280 lncRNA 0.51 2 80351994 80354313

Neighbor

gene id symbol gene type direction distance location
LOC110516867 LOC106594631 coding downstream 374 80286961 ~ 80347887 (-)
LOC110517959 LOC106593769 coding downstream 79422 80242189 ~ 80268839 (-)
LOC118938881 LOC106593769 coding downstream 107183 80235130 ~ 80241078 (-)
LOC110510397 LOC106596262 coding downstream 116603 80151017 ~ 80231658 (-)
LOC110516866 NA coding upstream 14996 80369309 ~ 80370531 (-)
LOC118936542 LOC106592443 coding upstream 16254 80370567 ~ 80391741 (-)
LOC110515349 crbl2 coding upstream 762883 81117196 ~ 81119754 (-)
LOC118938883 NA coding upstream 844009 81196824 ~ 81199165 (-)
LOC118938884 NA coding upstream 987601 81341914 ~ 81343353 (-)
G1329793 NA non-coding downstream 9499 80338530 ~ 80338762 (-)
G1329792 NA non-coding downstream 15935 80331962 ~ 80332326 (-)
G1329791 NA non-coding downstream 19194 80328470 ~ 80329067 (-)
G1329784 rtcb non-coding downstream 64183 80270038 ~ 80284078 (-)
G1329799 NA non-coding upstream 2661 80356974 ~ 80357260 (-)
G1329800 NA non-coding upstream 3596 80357909 ~ 80358325 (-)
G1329801 NA non-coding upstream 4067 80358380 ~ 80358706 (-)
G1329802 NA non-coding upstream 5910 80360223 ~ 80360481 (-)
LOC110510850 NA other downstream 208859 80133088 ~ 80139431 (-)
LOC110510401 LOC106592932 other downstream 391152 79910682 ~ 80084406 (-)
G1329894 NA other upstream 197921 80552234 ~ 80552485 (-)
G1330106 lrp6 other upstream 524507 80878820 ~ 80879403 (-)
G1330142 NA other upstream 601218 80955531 ~ 80957790 (-)
G1330168 NA other upstream 650559 81004872 ~ 81006072 (-)

Expression


Co-expression Network