XLOC_032277


Basic Information

Item Value
gene id XLOC_032277
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42692622 ~ 42751759 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064933
gcgtcagctgacagtcatacaccattatatgactgttttgaggattgtatatgatgggcgacggcacctgtaatcaaaaggaaagggaatcgcgccgtttttaatatttacgAGTGTTTTCAtccctaaacaaagcgaaagtaGAGATGACTCGCGCTTTAGAGCAAGtagcgacccctggtggttcggagtatgggttgcgtatagggaggctcggctgttcagagaaagactgaaaatacaggaaaatacctttacgggatgatagcgatATAGAactaaaatacgggagaatccagGGAAAAATGTGAGGGTTAAGACATttggcctcaacacacctgcaagggtgTTTCTAAAgcgtagtaagagcttgattaactaacccaggtgtgtttgattggggctggaactaaatGTTGCAAGACATCAACcttccagggccgagtttgggcacccctgttttatAGTGTAAAAACGTGATTTCTGAAGGTCAAATATGCTTGCTTGACACCCAAGAACCAATTCTTTCTTTTTCCTGTCACGTGGCATGTTTGAATTTTCTCCAAGCAGCCATGGTGTCTTCAAAAGATTTAGTTTAAACCTCTTACTGAATGGGATTGACTGGAAATTGTCATTTGACAATAAAATGGCTGTTTGGTATGACATGACGGGACTCCTCTCTTTCTCCTCTGGTCTTGTACTCCTCGACCCAGTGTATATGCTGAAGATCAAGTTTCTCCGGCCCTGCAGCTAAGTCCAGCTGACGACAGACCGGTTGGCAGTCTTGTTTGATGCTGAAAGCGGATCCCAGTGCCGTTCTATGAGCTCTGCATAACAGGAATGTGCAGGAGAAAGGGATGACCATGTTGTGGTGTCTCTCTGATCCCCTTCATGAGTAACCTGAGAAGAAGTATGGGTTCGAAACATCTAGGGGGCTGCCGTCGCTCTTTTTTACACTCCTTTTTTTTTATCCATCTCAAAGAGATCTGCCATAGCCGAAGAAAGCTATCCATTAGCATTCCAATTTATCTCCATGGCAGTTGCTTGGAAGTACACGATTTGAAATCTGTTATCTTTCCTCAAGGGACCacaaaattgttttaattaatcaCCTGAGCTGTACAAATTCATGTGACAAATCATTCTGGAGATACAGGAAAATTACGTTAGATCATCAtagatcatttaaattaatatttttcatcaAAACATTAATACACCTACATTGTTTCCAACTCTAAAACTGTCTGTAAAATTCACTTTCATCCGAACTCACCAGAACTAAAAAATCAGAACTCACCCAACTGTTAAATaacatataattttattattattcctttttaataatttttgccGTTTGTTACGTGACCAAGAAAATGAAAAGAATTACTGTTTTGTCATATGACTACAATGAATGCACTCACTGTTttcaaattgtatttgtttttaatgcaaaaGAGGAAAGCTCAAAAGGTTGTAATTCTCGTATACACCTATATTTACTGTCTCCAACTAATAATCAAAATGCACATTTGTATACCAGGAGCTTACAAGCCTTATTTAGCCCTAAATTATGCAAATAATGCCTTcttaattgtaagtcactttggactgtaagtctgctaaatgactaaatgcaattatatattagtaccttaaaggacacctatgatgaaaatcatctttttgaagctgtttggacagaactgtgtctAGGTATAGTGTGTGCAGTCATATTAAAGTGATAGAAACACAGC
>TCONS_00063028
ctggaactaaatGTTGCAAGACATCAACcttccagggccgagtttgggcacccctgttttatAGTGTAAAAACGTGATTTCTGAAGGTCAAATATGCTTGCTTGACACCCAAGAACCAATTCTTTCTTTTTCCTGTCACGTGGCATGTTTGAATTTTCTCCAAGCAGCCATGGTGTCTTCAAAAGATTTAGTTTAAACCTCTTACTGAATGGGATTGACTGGAAATTGTCATTTGACAATAAAATGGCTGTTTGGTATGACATGACGCCATGAAGTGTCAACAAACTACTTCCAAGCAGCCATTAAAAGGCATTGGCGCCTTTATAAATAATTCAACCACTTGACTGGATGCTAAATGAATGGAGATGATACAGGACAGAAGGTCTTTGGTTTCCAGGGAGTCCTTCAGGAGGAGGGAGTGTTTGGAGGGTTAAAATCACCTCCTCAAAACAACACCCACCCCTAGACAAACAAAAAGAGAGGCTTAACACCAACCGAGCTGATCTTCCCTCCTCTTTTTCTTCCTCTTCCTCAGACTCGGTGAGAAATTGCAGAGGTTTTCCTGCTCTTTTCTCTCCAGAAACAAAAAGAGGCATTTCTGTGAATCAAAGGCACCCCTCAGGAGTCTGTCTTAGGTCCACCCCGAAATGCCACCATGGAGTTTAAGGGCTCACGGGGGCCTGGAGCAGACAGCAGGTGGAACAGTTCCAGGTTTTGTCCTCATTTGTCAGTCAGTAGCCTAGGAGTGATGTTCTGTTTAGTAGGGAAATGAAGAGAAATGACTTGTTGCCAACCGGAAAAAGTTTTGTCAATGAACGGATGGATGAATTGGGAACAAGGGAGGCACATGGGTTGCAGCATTTACTGAAAGAATCTGTCATGGATATGCTAGACAGAGATGGATTTTAGTGAATAAATGAAGTATATACAGAACAATCATCTCAATTCATTGGTCGCTAATCAAGAGATGACTCCATTCAAGTGTGTGAGAAAGTTCCCTCCATGTGGTTCTGGTCCACGTGACGGGAAAACATGCATGTATGAGAGATAATGTGGCCTAAATGATCAGTTTAATTACTATATGTCTCAAGCTCTATGGCAGCATTAATGTTAACTATAGCATCCTCCAAACATCTACTGTATACTCCTGGGTCAGAATTATCCGAGGAACCTATGATAGTAAATAACATCATTAACCTTTTAGAGTGGGAATGCTTTCCCTTGATTAGCAACCACTGAATAAGCTTGTTGTTGCAGTGTTGAATGACAAATGGATGTAAACATCCTCTTGAGGTAGTCGCTATTGTGATGTTAAACTAGTGGATAGTGATGTTTCAAACACACAAGTGTCCCTCTCCCTAGAAACAGTCAGTTTATACAAGCAGGGAAAATACAGAGATTcgctattttgttttgtttatgctaaTGGACCTTAGTTTTTGTGTGTATAATTGGGTTgacgtttattaaaataaat
>TCONS_00064934
ctggaactaaatGTTGCAAGACATCAACcttccagggccgagtttgggcacccctgttttatAGTGTAAAAACGTGATTTCTGAAGGTCAAATATGCTTGCTTGACACCCAAGAACCAATTCTTTCTTTTTCCTGTCACGTGGCATGTTTGAATTTTCTCCAAGCAGGGACTCCTCTCTTTCTCCTCTGGTCTTGTACTCCTCGACCCAGTGTATATGCTGAAGATCAAGTTTCTCCGGCCCTGCAGCTAAGTCCAGCTGACGACAGACCGGTTGGCAGTCTTGTTTGATGCTGAAAGCGGATCCCAGTGCCGTTCTATGAGCTCTGCATAACAGGAATGTGCAGGAGAAAGGGATGACCATGTTGTGGTGTCTCTCTGATCCCCTTCATGAGTAACCTGAGAAGAAGTATGGGTTCGAAACATCTAGGGGGCTGCCGTCGCTCTTTTTTACACTCCTTTTTTTTTATCCATCTCAAAGAGATCTGCCATAGCCGAAGAAAGCTATCCATTAGCATTCCAATTTATCTCCATGGCAGTTGCTTGGAAGTACACGATTTGAAATCTGTTATCTTTCCTCAAGGGACCacaaaattgttttaattaatcaCCTGAGCTGTACAAATTCATGTGACAAATCATTCTGGAGATACAGGAAAATTACGTTAGATCATCAtagatcatttaaattaatatttttcatcaAAACATTAATACACCTACATTGTTTCCAACTCTAAAACTGTCTGTAAAATTCACTTTCATCCGAACTCACCAGAACTAAAAAATCAGAACTCACCCAACTGTTAAATaacatataattttattattattcctttttaataatttttgccGTTTGTTACGTGACCAAGAAAATGAAAAGAATTACTGTTTTGTCATATGACTACAATGAATGCACTCACTGTTttcaaattgtatttgtttttaatgcaaaaGAGGAAAGCTCAAAAGGTTGTAATTCTCGTATACACCTATATTTACTGTCTCCAACTAATAATCAAAATGCACATTTGTATACCAGGAGCTTACAAGCCTTATTTAGCCCTAAATTATGCAAATAATGCCTTcttaattgtaagtcactttggactgtaagtctgctaaatgactaaatgcaattatatattagtaccttaaaggacacctatgatgaaaatcatctttttgaagctgtttggacagaactgtgtctAGGTATAGTGTGTGCAGTCATATTAAAGTGATAGAAACACAGC
>TCONS_00064935
TTTCTTTTTCCTGTCACGTGGCATGTTTGAATTTTCTCCAAGCAGCCATGGTGTCTTCAAAAGATTTAGTTTAAACCTCTTACTGAATGGGATTGACTGGAAATTGTCATTTGACAATAAAATGGCTGTTTGGTATGACATGACGGCCTGCTCCCCCTTCCACTGTTCACTTCCGCGACTCcgcaaccctcttcactttcgtccgcgaataccccctgctcttcactttcatcctttGTCTGCGGCACCCCTCCACCGTCCAACCTAGTAAGGAGGAAAAGGAATAAAACATCAACAGATACCAGGCTCAGTAGGGTACAACCaattctcctctagccaaactagtgcttaatttgtaaattgcaagATCCCGGGGTAATGGATCGGGGTTGTGGATGCGGCATGTCGGGGATGTACTGTAAGTGAAGAACCAGGTGGAAGGTGTTCGGGATCCGTCCTGTTCCCGCACAAATTTAAGTTCtgggccaaacttcttgtgcagagctggatgtccatcgtgaagaagctgcaggtgtgagtaggtcacagGTGGATGTTCAGGGTGGCCCACGGGACCAATGTGGAGACTCtcctgtcactggggtctttcaggaatcactCTAATGCTCTCCACTCTTCCATGACccccacagcatctgctcaggatatggcttggtcctcgatggttggcatcatctgtTCACAGGCCTTGGAACACATCAGTGGCACTGCACAATATCTAGGGGACTATAGATGAGTATCCTCTAGGTGGATGTGAATATAAAGGAGTGTTTGAATGTGAAATT
>TCONS_00064936
TTTCTTTTTCCTGTCACGTGGCATGTTTGAATTTTCTCCAAGCAGCCATGGTGTCTTCAAAAGATTTAGTTTAAACCTCTTACTGAATGGGATTGACTGGAAATTGTCATTTGACAATAAAATGGCTGTTTGGTATGACATGACGTTTTTACAGGGAGGAGCGAGAGGCAAAAATGAAGGGGAGGAAAGGAGAGAATGAAGGTCTGCAGTCTGTCATTGTGTCATACAGGGATGAGTATGGGTGAAAGGGCTCTGCGAAAACATTATGAGAGATGTATGgattttttgctgttttgttcTCCCCCCTCTATCTGTTTGCTCATGGTAATCTGTCATTCTGTCATTTACCACGGGTAGAGATGTCTGTCCTGCTGGCCTACAGAGACATATTGGCGAAATGAAAGGGTACTTCGTTGGATGTTTAATTTATGTTCTGGTCCATTTGGCTCAATATTTGGGCATCAAATAATGCTCTTATGGTGtcgattcattttcttttgtatatttGCAATGTCGAGCCATTAGCAAAGCACTGGACAAATCTCGGTAAAAGTTAaggaaaatctgtatttattagACAAATGTTTACAATCTGATGAAACCCACATGTTTCCTTCTAAAAGTGATCTTTTGTCAAGTTGTAAAACATTTTAACCCTCAATGGCAAAGGTGCCCAACATTTTTTTATG
>TCONS_00063029
TTCAAAAGATTTAGTTTAAACCTCTTACTGAATGGGATTGACTGGAAATTGTCATTTGACAATAAAATGGCTGTTTGGTATGACATGACGGCCTGCTCCCCCTTCCACTGTTCACTTCCGCGACTCcgcaaccctcttcactttcgtccgcgaataccccctgctcttcactttcatcctttGTCTGCGGCACCCCTCCACCGTCCAACCTAGTAAGGAGGAAAAGGAATAAAACATCAACAGATACCAGGCTCAGTAGGGTACAACCaattctcctctagccaaactagtgcttaatttgtaaattgcaagATCCCGGGGTAATGGATCGGGGTTGTGGATGCGGCATGTCGGGGATGTACTGTAAGTGAAGAACCAGGTGGAAGGTGTTCGGGATCCGTCCTGTTCCCGCACAAATTTAAGTTCtgggccaaacttcttgtgcagagctggatgtccatcgtga

Function

GO:

id name namespace
GO:0007051 spindle organization biological_process
GO:0030504 inorganic diphosphate transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097941

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064933 False 1757 lncRNA 0.39 3 42692622 42751759
TCONS_00063028 False 1477 lncRNA 0.41 3 42693025 42744089
TCONS_00064934 False 1254 lncRNA 0.38 2 42693025 42751759
TCONS_00064935 False 806 lncRNA 0.48 3 42693147 42695949
TCONS_00064936 False 689 lncRNA 0.39 3 42693147 42705338
TCONS_00063029 True 466 mRNA 0.48 2 42693288 42695664

Neighbor

gene id symbol gene type direction distance location
XLOC_032276 rbm6 coding upstream 1886 42666694 ~ 42690736 (+)
XLOC_032275 NA coding upstream 26614 42656713 ~ 42666008 (+)
XLOC_032274 BX005129.3 coding upstream 39197 42646411 ~ 42653425 (+)
XLOC_032273 BX005129.5 coding upstream 49589 42635960 ~ 42643033 (+)
XLOC_032272 BX005129.4 coding upstream 69970 42618902 ~ 42622652 (+)
XLOC_032278 sema3fa coding downstream 67204 42818963 ~ 42916343 (+)
XLOC_032279 gnat1 coding downstream 167174 42918933 ~ 42930302 (+)
XLOC_032280 tcta coding downstream 264157 43015916 ~ 43019222 (+)
XLOC_032281 arl6ip5a coding downstream 482454 43234213 ~ 43241631 (+)
XLOC_032282 NA coding downstream 590184 43341943 ~ 43347573 (+)
XLOC_032271 NA non-coding upstream 81687 42604241 ~ 42610935 (+)
XLOC_032286 NA non-coding downstream 747221 43498980 ~ 43546988 (+)
XLOC_032287 NA non-coding downstream 845837 43597596 ~ 43601872 (+)
XLOC_032289 BX119974.1 non-coding downstream 1381209 44132968 ~ 44133082 (+)
XLOC_032292 NA non-coding downstream 1648883 44400642 ~ 44805588 (+)

Expression


Co-expression Network