XLOC_032278 (sema3fa)


Basic Information

Item Value
gene id XLOC_032278
gene name sema3fa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42818963 ~ 42916343 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063030
GAAGCGCGTGGGCGTCGCCCAGggtgatggagagagagagagtgcgcgCGAGGCGAGCGCACACGAGAGCCCTTCGTTTGCGTGTGATTTTGTCAAGATAAGCACCCGTATTACTAACAtgtcttgtgtttttgttttgatttcacCGCATGTATTTGCAGTGCCTAATTGCGTTCCAAACATAAATGGGTGTTACTTTTAAGGTAAGTCTCCGCCCAGGGGGAGTAACAGCGCTCCATCCACCTGCCAGGCTACTTCAGCAGCAGACAGTCAGTAGACCTAAAGCGCgcgcgctgctgctgctgctccgtGGACAGAAATACACAACACGCGTTTAAAAACTCCGGAGGAAATACGCGCACTTCTTTTGAACTGGCACGGAATCACAGTCACATAAATTAGTTTAAAGGACCTACTACTTTGTGGACACGTGTATGCCGTTACTTTTAGCCGGACGCATTGTTTTTTCTGACCCTTTTCTTTGCGCTGGATTGCAAATGATTTGTTCACTGGGACACACAGGATCGATTGTCGTGACGGACGTCTTGTAGGACTGATAAATCTCTTGTGGGTTTTATGGATAAAGTGATCATGCAGGGAGCCGGGACTTTGGTGCTGGGGACCCTTCTGGTCTCTGTATTCTCAGCTGTCTCGGTCCACAGCAGCCCTTTGTCTTCCCTGCCACCCGCCTCTGTTCCACGAGTCTTCCTGTCCTTCAAAGagctGAAGTCTACTGGAACAGCCCATCACTTTGCCTTCCTGCTGAACTCGACGGACTACAGAATCCTCCGCATGGACGAGGATCATGATCGCATGTATGTGGGCAGCAAGGATTACATTCTGTCTCTAGACCTGAATGACATCAACAAAGAGCCCCTTATAATTCACTGGCCTGTAGCTCCACAGAAAAGGACTGAATGTGTACTCTCAGGGAAAGACATCAATGGCGAATGTGGTAATTTCATCCGTCTAATCGAGCCGTGGAACCGGACTCACCTGTATGTGTGCGGGACGGGAGCTTACAACCCCATCTGCACCTATGTGGACAGAGGCCAAAGGGCACAGGAATACATTTTCCGACTGGAGCCTGGTAAAGTAGATTCTGGGAAAGGAAAATGCCCCTACGACCCCAAACTCAACAGCGTCTCAGCTTTGATAAATGGCCAGCTTTATGCCGGCGTCTACATCGATTTTATGGGAACAGACTCTGCCATCTTTCGCACGTTGGGCAAACACACGGCAATGAGGACCGACCAGTATAACTCCCGCTGGCTCCACGATCCAACATTTGTCCATGCTCAGCTCATCCCTGATAGTGCAGAAAAGAATGACGACAAGCTGTATTTCTTCTTCCGTGAGAAGGCCTCTGAGATGGGTCAGACTCCCATGGCTCAATCTAGGATTGGCAGAATTTGCCTgAATGATGATGGAGGACACTGCTGTCTGGTGAACAAGTGGAGCACCTTCCTGAAGGCTCGGCTCATCTGCTCTGTCACCGGCTCTGATGGCATCGAGACGCATTTCGATGAGCTCAGGGACGTGTACATCCAGAAGACTCAAGACACAAAGAATCCTGTCATCTACGGCGTCTTTTCCGTGTCCGGGTCTGTGTTTAAAGGCTCAGCAGTATGTGTTTATTCAATGGCTGATGTGCGCATGGTCTTCAATGGGCCTTTCGCTCATAAAGAAGGCCCAAACTACCAATGGGTTGCATACCAGGGCAAAATCCCATACCCTCGCCCAGGAACATGTCCAGGAGGGACGTTTACCCCCAACATGAAGTCTACTAAAGATTACCCAGATGAGGTGATCAACTTCATGCGCACACATCCCACCATGTTCAATGCAGTTTATCCAGTCCACAAGCGCCCCCTGGTGGTACGAACCAACGTGGATTATGAGTTCACCACCATCACTGTGGACCAAGTGGCTGCAGCTGATGGCAACTATGAAGTTCTGTTCTTAGGAACAGACAGGGGAACAGTTCAGAAAGTGATTGTCCTGCCCAGAGATGATCTACAGACTGAAGAGCTGGTTTTGGAGGAGGTGGAGGTCTTCAGAGTTCCAACTTCAATCACTACTATGAAGATTTCTCCAAAACGACAACAGCTGTATGTCAGTTCGGCGGTGGGCGTCACACATCTGGCTCTGCACAGATGTGATGTTTACGGAGAGGCCTGTGCCGACTGCTGCCTGGCCAGAGACCCATACTGTGCCTGGGACGGAAAGTCCTGCTCTCGCTACTCAGCAAACCAAAAAAGGCGGAGTCGAAGGCAAGACGTGAAGTATGGAAACCCTATAAGGCAATGCAGAGGCTACAACTCGAATGCCAATAAGAACACATTGGAGACAGTGCAGTATGGAGTAGAGGGAAGCACAGCCTTTTTGGAGTGTCAGGCCAGATCTCCTCATGTGTCCATCAAGTGGCATTTCCAGAAGGAGAACAGCGACCGGAGAAGAGAGATCCGTTCTGACGGGCGTGTGGTTCGCACGGAACAGGGCCTCCTCCTGCGCTCCCTCCAGCTGTCTGACAGCGGTGTTTACCAGTGCACCTCAACTGAGAAGAACTTCAAACACACCCTTGTCAAACTCCAGCTCGTGGTTCTCTCCGCCCACACAGTCAACAGCATCCAGACTGAAAGCGGCGCCCCGGCCGCCCCACCCCTTCAGTCCAGCGCCTGGACGCCCAGCGCAGAACAATACAAAGACCTCCTGACCATCCTCAGCCAACCTGAGATGGGCCTCATCAACCAGTACTGCCAAGACTACTGGCAGATAGGGGACGACCCCATGGCCCACAAGAAGAAGGACCTCAAGGAGCTCCAGAAGGACCTGCGGAAGCCTCGAAATAGGAGACACCACCAGGAGCAGAGCAGCATGGCTGAGACATGAGGAAACTTGCATAATAATCCACCAACAACCATCATGGCCGAGGAGAACATAAACAATACGTTTCTCTTGAAAGCGCATAGTATTTATTGTAGGCTTGTACATAGTTAGATTCTGTGGATATCTTTGTATGGGAATAgcgcaacaacaacaacgaaaaaaaaaagatgaaaacgtTTTGTGTATAGATCTGTGCAAATATTTTGTTAGCATTGTTACTTCCCTTCCGATATATTTATTACAGCGGTATTCATCCGTCATCCACATTATATGACTGTTATCATGAAACGTTGTGTATATATTACAGTTTCAGTGAGCGGAGAGTTGGACATCTGATGGACAGTTTGACTGCGTTTCGATGTTTTGATACCGGAGTGACTCTTTTAGTCGAGCACGTGTTCTCAGTTAGATGCGAATATTTGGCGCATCTACATTTTTCTGTGACCTCCCCTGAAAAAAAGACTTTAGTATCATCAGAAACACTCATCTTTTAATCTTCTTGATCTTCCATATGTTGCTATGCTAATGCGTGTTAAATATAAAGTCGATTCTGTGTGTTATATATTTGGTTTATGATCGATTACAGCCTcctgtacagtatgtatgtacatcactttttgttttcctttatataaatatgtattattgcaCGCAAAGGAACTGAAAACATGTCCATCTCTTTGCAGAGCAGAATggttttttttggtttttgtttttgtttgttttttaagagaTATGTACCTCTTCAgtcattttcagaaaaaaaactaaataaataaaagtccaAGCAAGCTCCTCTAAACATTTGATCATTTGGACAAGTTAAAACGTCTAGAATGAATCTTTAGGGGGCTTGATTGAGTTTGCATGAACTGTATTTGTACTGTACAGGTATGTAGTCAAATTCTGGATATGTGGCTGTGTTGCTGTATGGTTTTTAACATAGTGaatggagagaaagagagcgagagagactgTTTTTTTGAAAACAGAGGACTTTGCTAAACTAGTGATGGAATCAAGCACAATTACCTGACGTGTCTGTTTCACCTCCGTTGTGTTTTCTCTACAAGCATAGCAAAACGGGCTGTGTGAAATGATTGTTGTATACgtgtattttgtttcttttttgttgtaaGACATTACCCATCACTGTGGTTTGTCctctttgttttgtcttttttttttagaatattctAATGTGAAAAGACCCTAAATTAGATGTTATGAACAGTTAATGTtatagtaatgtattttttatttgttttcttttccatCTTTGTCGTTGACTaattaaagttatatattttataacaaaCACATTTTGGGTTTTCTGCAGAAAAATGAGTGAATTTATGCTATGTttgccattgacttgcattttgtaaactataaacaaaCACAGTTCCagctaaaattgtatttttttttctacggCGAGGAAATGTTATAAGTCTTTATCTGGCTTTTTTGGGATTAATTATTGTAATCTGCCAATTGCaccagagaaatactgggaaatctctgtagactgatggcatttcatgctgttcagccatATAATCTTagaatgtcagcaaaatcacctgttttgtcaccTTAGATATTACGGTAGAGATTCATTCAaatgctagctctaaagtgacgttggtgaagtagcaacagtttctgctgttctgacggtcagctgcagatgtgagtgaatagcggaagaaagtagttcctcttacttttttatacacaattatgtcgtcgaactgttgtataaacgcaatatcacactcgtagcagtgcgatatggctgtatatcttcACTGAGtaatacgtttaaattcaaatgcagtgccTACTTAGTAGGTGGTTTTGGACGCagtcattgaattttgg
>TCONS_00063031
GGCACGGAATCACAGTCACATAAATTAGTTTAAAGGACCTACTACTTTGTGGACACGTGTATGCCGTTACTTTTAGCCGGACGCATTGTTTTTTCTGACCCTTTTCTTTGCGCTGGATTGCAAATGATTTGTTCACTGGGACACACAGGATCGATTGTCGTGACGGACGTCTTGTAGGACTGATAAATCTCTTGTGGGTTTTATGGATAAAGTGATCATGCAGGGAGCCGGGACTTTGGTGCTGGGGACCCTTCTGGTCTCTGTATTCTCAGCTGTCTCGGTCCACAGCAGCCCTTTGTCTTCCCTGCCACCCGCCTCTGTTCCACGAGTCTTCCTGTCCTTCAAAGagctGAAGTCTACTGGAACAGCCCATCACTTTGCCTTCCTGCTGAACTCGACGGACTACAGAATCCTCCGCATGGACGAGGATCATGATCGCATGTATGTGGGCAGCAAGGATTACATTCTGTCTCTAGACCTGAATGACATCAACAAAGAGCCCCTTATAATTCACTGGCCTGTAGCTCCACAGAAAAGGACTGAATGTGTACTCTCAGGGAAAGACATCAATGGCGAATGTGGTAATTTCATCCGTCTAATCGAGCCGTGGAACCGGACTCACCTGTATGTGTGCGGGACGGGAGCTTACAACCCCATCTGCACCTATGTGGACAGAGGCCAAAGGGCACAGGGTTTTCTGCAAGATCAGATGCCTCGTGCAGGAGGCCGAACCAGTCGAGCTGCTGACCCTAGTGCCTCACCAGAACCATATGCACCCAAGGAATACATTTTCCGACTGGAGCCTGGTAAAGTAGATTCTGGGAAAGGAAAATGCCCCTACGACCCCAAACTCAACAGCGTCTCAGCTTTGATAAATGGCCAGCTTTATGCCGGCGTCTACATCGATTTTATGGGAACAGACTCTGCCATCTTTCGCACGTTGGGCAAACACACGGCAATGAGGACCGACCAGTATAACTCCCGCTGGCTCCACGATCCAACATTTGTCCATGCTCAGCTCATCCCTGATAGTGCAGAAAAGAATGACGACAAGCTGTATTTCTTCTTCCGTGAGAAGGCCTCTGAGATGGGTCAGACTCCCATGGCTCAATCTAGGATTGGCAGAATTTGCCTgAATGATGATGGAGGACACTGCTGTCTGGTGAACAAGTGGAGCACCTTCCTGAAGGCTCGGCTCATCTGCTCTGTCACCGGCTCTGATGGCATCGAGACGCATTTCGATGAGCTCAGGGACGTGTACATCCAGAAGACTCAAGACACAAAGAATCCTGTCATCTACGGCGTCTTTTCCGTGTCCGGGTCTGTGTTTAAAGGCTCAGCAGTATGTGTTTATTCAATGGCTGATGTGCGCATGGTCTTCAATGGGCCTTTCGCTCATAAAGAAGGCCCAAACTACCAATGGGTTGCATACCAGGGCAAAATCCCATACCCTCGCCCAGGAACATGTCCAGGAGGGACGTTTACCCCCAACATGAAGTCTACTAAAGATTACCCAGATGAGGTGATCAACTTCATGCGCACACATCCCACCATGTTCAATGCAGTTTATCCAGTCCACAAGCGCCCCCTGGTGGTACGAACCAACGTGGATTATGAGTTCACCACCATCACTGTGGACCAAGTGGCTGCAGCTGATGGCAACTATGAAGTTCTGTTCTTAGGAACAGACAGGGGAACAGTTCAGAAAGTGATTGTCCTGCCCAGAGATGATCTACAGACTGAAGAGCTGGTTTTGGAGGAGGTGGAGGTCTTCAGAGTTCCAACTTCAATCACTACTATGAAGATTTCTCCAAAACGACAACAGCTGTATGTCAGTTCGGCGGTGGGCGTCACACATCTGGCTCTGCACAGATGTGATGTTTACGGAGAGGCCTGTGCCGACTGCTGCCTGGCCAGAGACCCATACTGTGCCTGGGACGGAAAGTCCTGCTCTCGCTACTCAGCAAACCAAAAAAGGCGGAGTCGAAGGCAAGACGTGAAGTATGGAAACCCTATAAGGCAATGCAGAGGCTACAACTCGAATGCCAATAAGAACACATTGGAGACAGTGCAGTATGGAGTAGAGGGAAGCACAGCCTTTTTGGAGTGTCAGGCCAGATCTCCTCATGTGTCCATCAAGTGGCATTTCCAGAAGGAGAACAGCGACCGGAGAAGAGAGATCCGTTCTGACGGGCGTGTGGTTCGCACGGAACAGGGCCTCCTCCTGCGCTCCCTCCAGCTGTCTGACAGCGGTGTTTACCAGTGCACCTCAACTGAGAAGAACTTCAAACACACCCTTGTCAAACTCCAGCTCGTGGTTCTCTCCGCCCACACAGTCAACAGCATCCAGACTGAAAGCGGCGCCCCGGCCGCCCCACCCCTTCAGTCCAGCGCCTGGACGCCCAGCGCAGAACAATACAAAGACCTCCTGACCATCCTCAGCCAACCTGAGATGGGCCTCATCAACCAGTACTGCCAAGACTACTGGCAGATAGGGGACGACCCCATGGCCCACAAGAAGAAGGACCTCAAGGAGCTCCAGAAGGACCTGCGGAAGCCTCGAAATAGGAGACACCACCAGGAGCAGAGCAGCATGGCTGAGACATGAGGAAACTTGCATAATAATCCACCAACAACCATCATGGCCGAGGAGAACATAAACAATACGTTTCTCTTGAAAGCGCATAGTATTTATTGTAGGCTTGTACATAGTTAGATTCTGTGGATATCTTTGTATGGGAATAgcgcaacaacaacaacgaaaaaaaaaagatgaaaacgtTTTGTGTATAGATCTGTGCAAATATTTTGTTAGCATTGTTACTTCCCTTCCGATATATTTATTACAGCGGTATTCATCCGTCATCCACATTATATGACTGTTATCATGAAACGTTGTGTATATATTACAGTTTCAGTGAGCGGAGAGTTGGACATCTGATGGACAGTTTGACTGCGTTTCGATGTTTTGATACCGGAGTGACTCTTTTAGTCGAGCACGTGTTCTCAGTTAGATGCGAATATTTGGCGCATCTACATTTTTCTGTGACCTCCCCTGAAAAAAAGACTTTAGTATCATCAGAAACACTCATCTTTTAATCTTCTTGATCTTCCATATGTTGCTATGCTAATGCGTGTTAAATATAAAGTCGATTCTGTGTGTTATATATTTGGTTTATGATCGATTACAGCCTcctgtacagtatgtatgtacatcactttttgttttcctttatataaatatgtattattgcaCGCAAAGGAACTGAAAACATGTCCATCTCTTTGCAGAGCAGAATggttttttttggtttttgtttttgtttgttttttaagagaTATGTACCTCTTCAgtcattttcagaaaaaaaactaaataaataaaagtccaAGCAAGCTCCTCTAAACATTTGATCATTTGGACAAGTTAAAACGTCTAGAATGAATCTTTAGGGGGCTTGATTGAGTTTGCATGAACTGTATTTGTACTGTACAGGTATGTAGTCAAATTCTGGATATGTGGCTGTGTTGCTGTATGGTTTTTAACATAGTGaatggagagaaagagagcgagagagactgTTTTTTTGAAAACAGAGGACTTTGCTAAACTAGTGATGGAATCAAGCACAATTACCTGACGTGTCTGTTTCACCTCCGTTGTGTTTTCTCTACAAGCATAGCAAAACGGGCTGTGTGAAATGATTGTTGTATACgtgtattttgtttcttttttgttgtaaGACATTACCCATCACTGTGGTTTGTCctctttgttttgtcttttttttttagaatattctAATGTGAAAAGACCCTAAATTAGATGTTATGAACAGTTAATGTtatagtaatgtattttttatttgttttcttttccatCTTTGTCGTTGACTaattaaagttatatattttataacaaa
>TCONS_00063032
ATCCATCCCCATGCAGGACTGATAAATCTCTTGTGGGTTTTATGGATAAAGTGATCATGCAGGGAGCCGGGACTTTGGTGCTGGGGACCCTTCTGGTCTCTGTATTCTCAGCTGTCTCGGTCCACAGCAGCCCTTTGTCTTCCCTGCCACCCGCCTCTGTTCCACGAGTCTTCCTGTCCTTCAAAGagctGAAGTCTACTGGAACAGCCCATCACTTTGCCTTCCTGCTGAACTCGACGGACTACAGAATCCTCCGCATGGACGAGGATCATGATCGCATGTATGTGGGCAGCAAGGATTACATTCTGTCTCTAGACCTGAATGACATCAACAAAGAGCCCCTTATAATTCACTGGCCTGTAGCTCCACAGAAAAGGACTGAATGTGTACTCTCAGGGAAAGACATCAATGGCGAATGTGGTAATTTCATCCGTCTAATCGAGCCGTGGAACCGGACTCACCTGTATGTGTGCGGGACGGGAGCTTACAACCCCATCTGCACCTATGTGGACAGAGGCCAAAGGGCACAGGGTTTTCTGCAAGATCAGATGCCTCGTGCAGGAGGCCGAACCAGTCGAGCTGCTGACCCTAGTGCCTCACCAGAACCATATGCACCCAAGGAATACATTTTCCGACTGGAGCCTGGTAAAGTAGATTCTGGGAAAGGAAAATGCCCCTACGACCCCAAACTCAACAGCGTCTCAGCTTTGATAAATGGCCAGCTTTATGCCGGCGTCTACATCGATTTTATGGGAACAGACTCTGCCATCTTTCGCACGTTGGGCAAACACACGGCAATGAGGACCGACCAGTATAACTCCCGCTGGCTCCACGATCCAACATTTGTCCATGCTCAGCTCATCCCTGATAGTGCAGAAAAGAATGACGACAAGCTGTATTTCTTCTTCCGTGAGAAGGCCTCTGAGATGGGTCAGACTCCCATGGCTCAATCTAGGATTGGCAGAATTTGCCTgAATGATGATGGAGGACACTGCTGTCTGGTGAACAAGTGGAGCACCTTCCTGAAGGCTCGGCTCATCTGCTCTGTCACCGGCTCTGATGGCATCGAGACGCATTTCGATGAGCTCAGGGACGTGTACATCCAGAAGACTCAAGACACAAAGAATCCTGTCATCTACGGCGTCTTTTCCGTGTCCGGGTCTGTGTTTAAAGGCTCAGCAGTATGTGTTTATTCAATGGCTGATGTGCGCATGGTCTTCAATGGGCCTTTCGCTCATAAAGAAGGCCCAAACTACCAATGGGTTGCATACCAGGGCAAAATCCCATACCCTCGCCCAGGAACATGTCCAGGAGGGACGTTTACCCCCAACATGAAGTCTACTAAAGATTACCCAGATGAGGTGATCAACTTCATGCGCACACATCCCACCATGTTCAATGCAGTTTATCCAGTCCACAAGCGCCCCCTGGTGGTACGAACCAACGTGGATTATGAGTTCACCACCATCACTGTGGACCAAGTGGCTGCAGCTGATGGCAACTATGAAGTTCTGTTCTTAGGAACAGACAGGGGAACAGTTCAGAAAGTGATTGTCCTGCCCAGAGATGATCTACAGACTGAAGAGCTGGTTTTGGAGGAGGTGGAGGTCTTCAGAGTTCCAACTTCAATCACTACTATGAAGATTTCTCCAAAACGACAACAGCTGTATGTCAGTTCGGCGGTGGGCGTCACACATCTGGCTCTGCACAGATGTGATGTTTACGGAGAGGCCTGTGCCGACTGCTGCCTGGCCAGAGACCCATACTGTGCCTGGGACGGAAAGTCCTGCTCTCGCTACTCAGCAAACCAAAAAAGGCGGAGTCGAAGGCAAGACGTGAAGTATGGAAACCCTATAAGGCAATGCAGAGGCTACAACTCGAATGCCAATAAGAACACATTGGAGACAGTGCAGTATGGAGTAGAGGGAAGCACAGCCTTTTTGGAGTGTCAGGCCAGATCTCCTCATGTGTCCATCAAGTGGCATTTCCAGAAGGAGAACAGCGACCGGAGAAGAGAGATCCGTTCTGACGGGCGTGTGGTTCGCACGGAACAGGGCCTCCTCCTGCGCTCCCTCCAGCTGTCTGACAGCGGTGTTTACCAGTGCACCTCAACTGAGAAGAACTTCAAACACACCCTTGTCAAACTCCAGCTCGTGGTTCTCTCCGCCCACACAGTCAACAGCATCCAGACTGAAAGCGGCGCCCCGGCCGCCCCACCCCTTCAGTCCAGCGCCTGGACGCCCAGCGCAGAACAATACAAAGACCTCCTGACCATCCTCAGCCAACCTGAGATGGGCCTCATCAACCAGTACTGCCAAGACTACTGGCAGATAGGGGACGACCCCATGGCCCACAAGAAGAAGGACCTCAAGGAGCTCCAGAAGGACCTGCGGAAGCCTCGAAATAGGAGACACCACCAGGAGCAGAGCAGCATGGCTGAGACATGAGGAAACTTGCATAATAATCCACCAACAACCATCATGGC

Function

symbol description
sema3fa Enables neuropilin binding activity. Acts upstream of or within neural crest cell migration. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in brain; head; pectoral fin; and somite. Orthologous to human SEMA3F (semaphorin 3F).

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0050919 negative chemotaxis biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function
GO:0038191 neuropilin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050513-1 Enables neuropilin binding activity. Acts upstream of or within neural crest cell migration. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in brain; head; pectoral fin; and somite. Orthologous to human SEMA3F (semaphorin 3F).

Ensembl:

ensembl_id ENSDARG00000011163

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063030 False 4776 mRNA 0.45 18 42818963 42916343
TCONS_00063031 False 3923 mRNA 0.46 19 42819337 42915774
TCONS_00063032 True 2485 mRNA 0.52 18 42820228 42914497

Neighbor

gene id symbol gene type direction distance location
XLOC_032277 NA coding upstream 67204 42692622 ~ 42751759 (+)
XLOC_032276 rbm6 coding upstream 128227 42666694 ~ 42690736 (+)
XLOC_032275 NA coding upstream 152955 42656713 ~ 42666008 (+)
XLOC_032274 BX005129.3 coding upstream 165538 42646411 ~ 42653425 (+)
XLOC_032273 BX005129.5 coding upstream 175930 42635960 ~ 42643033 (+)
XLOC_032279 gnat1 coding downstream 2590 42918933 ~ 42930302 (+)
XLOC_032280 tcta coding downstream 99573 43015916 ~ 43019222 (+)
XLOC_032281 arl6ip5a coding downstream 317870 43234213 ~ 43241631 (+)
XLOC_032282 NA coding downstream 425600 43341943 ~ 43347573 (+)
XLOC_032283 BX927362.2 coding downstream 436928 43353271 ~ 43361226 (+)
XLOC_032272 BX005129.4 non-coding upstream 196311 42618902 ~ 42622652 (+)
XLOC_032286 NA non-coding downstream 582637 43498980 ~ 43546988 (+)
XLOC_032287 NA non-coding downstream 681253 43597596 ~ 43601872 (+)
XLOC_032289 BX119974.1 non-coding downstream 1216625 44132968 ~ 44133082 (+)
XLOC_032292 NA non-coding downstream 1484299 44400642 ~ 44805588 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_10896398_10912573 SEMA3FA, SEMA3F coding CI01000340 null 10896234 ~ 10912704 (+)