XLOC_032279 (gnat1)


Basic Information

Item Value
gene id XLOC_032279
gene name gnat1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42918933 ~ 42930302 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063033
CGGCCCAGGTGGTCAGATCCATCCCCAAAATCCCTCTAAGACTCCAAACAATTGATCAGTACTGGAGATCCAGTTGAGGTGTGAGCTGTGAGAGCACCTGGAGGCCTCTAGGCAAGCGAGTGGTCATCCAAAAGGACTTCTTTTTCCCTAATCAAAAGTCAGTATGGGGGCCGGGGCGAGCGCCGAGGAAAAACACTCCAGGGAGCTTGAGAAAAAGCTGAAAGAGGACGCAGACAAAGATGCCAGGACCGTCAAACTTCTGCTGCTAGGTGCTGGTGAGTCGGGGAAAAGCACAATTGTCAAACAGATGAAAATTATTCACAAAGATGGTTACTCCCTTGAAGAGTGCTTGGAGTTCATTGTCATCATCTACAGCAACACCATGCAGTCCATTCTGGCCGTTGTGAGGGCCATGACCACACTCAACATTGGCTATGGAGACGCTGCCGCACAGGATGATGCAAGGAAGCTGATGCATTTAGCAGATACTATTGAAGAGGGCACCATGCCAAAAGAGCTGTCGGACATTATCCTGAGGTTGTGGAAGGATTCAGGCATCCAGGCGTGCTTCGACAGAGCCTCAGAATACCAGCTCAACGACTCTGCTGGATATTATCTAAATGACCTGGAGAGGTTGATCCAGCCCGGCTATGTCCCTACTGAACAGGACGTCCTGCGTTCAAGAGTGAAGACCACAGGTATCATCGAGACCCAGTTCTCTTTCAAAGACCTCAACTTCAGGATGTTTGATGTGGGTGGTCAGCGCTCAGAGAGGAAGAAGTGGATTCACTGCTTTGAAGGTGTGACCTGTATCATCTTCATCGCTGCTCTGAGTGCATACGACATGGTGCTGGTGGAGGATGATGAAGTGAACCGAATGCATGAGAGTCTTCACCTGTTCAACAGTATCTGCAACCACCGTTACTTCGCCACCACATCTATTGTGCTTTTCCTGAACAAGAAGGATGTGTTCGTGGAGAAGATCAAGAAAGCACATCTGAGCATGTGCTTCCCTGAATATGACGGTCCCAACACCTTCGAAGATGCTGGCAACTACATCAAGGTGCAGTTCTTAGATCTGAACCTGCGACGAGATATCAAAGAAATCTACTCCCACATGACCTGCGCCACAGACACAGAGAACGTCAAGTTTGTGTTCGATGCCGTAACAGACATCATCATCAAGGAGAATCTCAAAGACTGCGGTCTCTTCTAAACAACACACTTTTTACAAGAGattggCTGAATCAACAAAACCCAATGCTTTGCTCCTTGTAGCTCGTTTCCTCCCTGGGTAACATACAGTTTCATGAGGGAATTGATTACACGTGGAAGAAGAAATTCTATTACTGCTGTTGGGATCTACATTTGACTGCATGTAATTTAACACCAGAGCCATCACAAATTATACACAAGAACACATGCAGCATCACCCTGTTTGAAAGAACTGGCTCTGAAGCGAGAAGTTTATAAGCTGTGTTTTGGATCTGTTAGTATTTCGCAGTGATCTGTCCTGTAGATTTGCAACTACACTACATGCAGCTGCAAACCAAATGACTAACCAAATGAATCACCTGCATATGCACTTCAGCAGAAGTActttaagaagattatatcagtTATACATTATAGCAGTGACTAACTGTGCAAAGTTCATGTTTTCAAGCCGATTAAGAAAAGACTTTACTGGCATAcacttctgttattttacagaggAGTTATGTCATGTAATGTCCTGTGATTGTCTATGTGAGGTGGATGACTGATGAGAAGATAGCATGTAATAATATTTGCTTAGATCAGGAGCACAGTTAGCAAGCTGAGAGACAATGAACACAATGTTTGAGTGCATTGATTAAACTACAACATCAAACACTGATTAAAAATGCCTAATTGACTGCAAAACCATGAACAATCATGTACatgtaaattaaaacaataaagctTATGTAGAAAAGACTGAACCT

Function

symbol description
gnat1 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in G protein-coupled adenosine receptor signaling pathway; adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway; and response to light stimulus. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in pineal complex and visual system. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1G; congenital stationary night blindness autosomal dominant 3; and night blindness. Orthologous to human GNAT1 (G protein subunit alpha transducin 1).

GO:

id name namespace
GO:0001973 G protein-coupled adenosine receptor signaling pathway biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007193 adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway biological_process
GO:0009416 response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-011128-11 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in G protein-coupled adenosine receptor signaling pathway; adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway; and response to light stimulus. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in pineal complex and visual system. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1G; congenital stationary night blindness autosomal dominant 3; and night blindness. Orthologous to human GNAT1 (G protein subunit alpha transducin 1).

Ensembl:

ensembl_id ENSDARG00000044199

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063033 True 1967 mRNA 0.44 9 42918933 42930302

Neighbor

gene id symbol gene type direction distance location
XLOC_032278 sema3fa coding upstream 2590 42818963 ~ 42916343 (+)
XLOC_032277 NA coding upstream 167174 42692622 ~ 42751759 (+)
XLOC_032276 rbm6 coding upstream 228197 42666694 ~ 42690736 (+)
XLOC_032275 NA coding upstream 252925 42656713 ~ 42666008 (+)
XLOC_032274 BX005129.3 coding upstream 265508 42646411 ~ 42653425 (+)
XLOC_032280 tcta coding downstream 85614 43015916 ~ 43019222 (+)
XLOC_032281 arl6ip5a coding downstream 303911 43234213 ~ 43241631 (+)
XLOC_032282 NA coding downstream 411641 43341943 ~ 43347573 (+)
XLOC_032283 BX927362.2 coding downstream 422969 43353271 ~ 43361226 (+)
XLOC_032284 mitfa coding downstream 460085 43390387 ~ 43433277 (+)
XLOC_032273 BX005129.5 non-coding upstream 275900 42635960 ~ 42643033 (+)
XLOC_032272 BX005129.4 non-coding upstream 296281 42618902 ~ 42622652 (+)
XLOC_032286 NA non-coding downstream 568678 43498980 ~ 43546988 (+)
XLOC_032287 NA non-coding downstream 667294 43597596 ~ 43601872 (+)
XLOC_032289 BX119974.1 non-coding downstream 1202666 44132968 ~ 44133082 (+)
XLOC_032292 NA non-coding downstream 1470340 44400642 ~ 44805588 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017075 gnat1,LOC108271583,LOC108231337,LOC108424115,LOC103133111,LOC102214189,LOC100706288,LOC102793896 coding CM030122.1 CM030122.1 43857493 ~ 43872095 (-)