XLOC_003228


Basic Information

Item Value
gene id XLOC_003228
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7825353 ~ 7826072 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008388
aatagacataattaataataataacatctaaagatgtcaatcttggtgggttttttttttcaaacacaactaattttgtcctaaatgagcataaacagttaggaaagcaatcgattgctttcattataacgttagatgtgcgCATTATTAAAGTGACACATCtgttatttaattcaatcaaacaaaaaaatcttaataaatgaaatccattcgttgctctttaatcagaatgtgtaagttatacagtgaaaaaagattaatgagatttgataacttgatcccttcttatggtgggcatatcccttatttttatccaagctttcatgttgttgatgccaaattctgatcctaccatcaGAATGTCGCAGCAGACATTGAGATTAATCAGACCAAGCAACGTTTTCCCAATTTTcttttgtctaattttggtgagcctgtgccaattgtggcctcagtttcctgttcttagctgacaggagcagcacccggtgtggtcttctgctgttgtaacCCATCCGTCTGAAGGTTTGgcatgttgtgcatttagagatgctctaccttggttgtaacgagtggttctttgagttactgttgcctttctgttgCCAggttgaaccagtctggccattctcctctgtcttctagcatcaacaaggtatCTGCGCCTAAAGAACTGCCGTTtgctggatattttttctttttcggaccattctctgtaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008388 True 720 lncRNA 0.37 1 7825353 7826072

Neighbor

gene id symbol gene type direction distance location
XLOC_003227 CR450813.2 coding upstream 42039 7782514 ~ 7783314 (+)
XLOC_003226 adgrl2a coding upstream 87711 7432533 ~ 7737642 (+)
XLOC_003225 diras1a coding upstream 483546 7324704 ~ 7341807 (+)
XLOC_003224 NA coding upstream 539043 7281239 ~ 7286310 (+)
XLOC_003223 si:ch73-238c9.1 coding upstream 545094 7276824 ~ 7280259 (+)
XLOC_003229 NA coding downstream 54070 7880142 ~ 7971030 (+)
XLOC_003230 prkacba coding downstream 303464 8129536 ~ 8150894 (+)
XLOC_003231 samd13 coding downstream 326800 8152872 ~ 8161149 (+)
XLOC_003232 dnase2b coding downstream 344876 8170948 ~ 8179145 (+)
XLOC_003233 tbl1xr1a coding downstream 739251 8565323 ~ 8682447 (+)
XLOC_003250 BX324177.11 misc downstream 3519731 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 3546814 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 3560290 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 3591961 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 3603321 11429393 ~ 11429689 (+)
XLOC_003217 NA non-coding upstream 673346 7149071 ~ 7152007 (+)
XLOC_003218 CU929070.2 non-coding upstream 674447 7150820 ~ 7150906 (+)
XLOC_003216 CR925817.1 non-coding upstream 721817 7095176 ~ 7103536 (+)
XLOC_003234 CR847563.1 non-coding downstream 751982 8578054 ~ 8580557 (+)
XLOC_003235 NA non-coding downstream 849897 8675969 ~ 8677720 (+)
XLOC_003236 CABZ01079837.1 non-coding downstream 1685461 9511533 ~ 9522073 (+)
XLOC_003237 NA non-coding downstream 1775673 9601745 ~ 9603070 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G181298 NA non-coding NC_053129.1 CM020926.1 652514 ~ 652800 (+)
striped catfish (Pangasianodon hypophthalmus) G207540 NA non-coding NC_047607.1 CM018553.1 7943678 ~ 7948171 (-)