XLOC_032280 (tcta)


Basic Information

Item Value
gene id XLOC_032280
gene name tcta
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43015916 ~ 43019222 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063034
aaaagaccaaaaggAACTGCTCTACTCTCTCTACTCTAGATGGCGATGATCACACCTAAAACCCGAATCTTCTCATCCCGTGAAGAAGAGATAGCGGTTCTGCTTTGTTTACTTTAAAGATGGATGCTCAGTTACACCTATTTTCTGAATTAACGGGATAATCTGCTTTAAAATTAACGTTAACCCTTAGAATGTAAGATAGCAAATACCCAGAATGGAGGAATCGTGGGATTTCGAGTTCTTGTCTCGCATGGTTGACAGTCTGGTCTCCTTTCTGTCCGAGTTTGTGGATGACTGGCTGGCAAACGACATGAGAGTTGCCGTGTTTAAAATACTCTTTAGCTGGCTTGTCGTCAGTCTCGTAGCCATCCATTTTGCCTGGAAAGTGTACGGGAATACGGTCAACGACATGTACTACAGGCAGGGGACTGGAGGACAGAATGGCGGGACTCCTGACACTCACCTGAGCGGATGGGAAAGTGCAGCTGGTGATGCCATGAAAACCCACCGTGAGTGATGAAGTACCTCCAGCTGACCTCAGAGCACAGACACACTAGATGGAAAAAGGCAACTGCATTCCTTCAAAACACTTGTGCCATTATAACAACTTTAACAGTGTGTTTGTCTATGAAGGAGTGGTGCCAGTTTCAAGCCCCAAACACATGAAAACGTGCTTGAAAATCCCTGACTGAATGGTGCAGTGCACTAGGAGAGTATTAAGGGAGTGAGCTATGACATACAGAAGCTCTGAATAAGTAAATAGACTTTAGAGACATGTTGGATTGAATTCTGTAAACAAATGGATAGACTTGAGCCACAGTTTCATCATTGATTAAAAACTGACATGAATACTAGTCAAAAGGAAGGTCCCATATGTTCACATAGTGATCTGGTCTGTTTAAAGGAATGTTTGATTTCAGTGGAAAATAGATTTAACTGTACAGAGAAATAAAGACAAGTACCTCTACCTGGCTTTCAGATATTCAAAAGAATACTGGTGTCTTTTTGTTTTGCAGtggattatataataaatattatgaatctAA

Function

symbol description
tcta Predicted to be involved in osteoclast fusion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TCTA (T cell leukemia translocation altered).

GO:

id name namespace
GO:0072675 osteoclast fusion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko02020 Two-component system
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040718-325 Predicted to be involved in osteoclast fusion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TCTA (T cell leukemia translocation altered).

Ensembl:

ensembl_id ENSDARG00000044194

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063034 True 1046 mRNA 0.41 3 43015916 43019222

Neighbor

gene id symbol gene type direction distance location
XLOC_032279 gnat1 coding upstream 85614 42918933 ~ 42930302 (+)
XLOC_032278 sema3fa coding upstream 99573 42818963 ~ 42916343 (+)
XLOC_032277 NA coding upstream 264157 42692622 ~ 42751759 (+)
XLOC_032276 rbm6 coding upstream 325180 42666694 ~ 42690736 (+)
XLOC_032275 NA coding upstream 349908 42656713 ~ 42666008 (+)
XLOC_032281 arl6ip5a coding downstream 214991 43234213 ~ 43241631 (+)
XLOC_032282 NA coding downstream 322721 43341943 ~ 43347573 (+)
XLOC_032283 BX927362.2 coding downstream 334049 43353271 ~ 43361226 (+)
XLOC_032284 mitfa coding downstream 371165 43390387 ~ 43433277 (+)
XLOC_032285 zgc:113054 coding downstream 430999 43450221 ~ 43474757 (+)
XLOC_032274 BX005129.3 non-coding upstream 362491 42646411 ~ 42653425 (+)
XLOC_032273 BX005129.5 non-coding upstream 372883 42635960 ~ 42643033 (+)
XLOC_032272 BX005129.4 non-coding upstream 393264 42618902 ~ 42622652 (+)
XLOC_032286 NA non-coding downstream 479758 43498980 ~ 43546988 (+)
XLOC_032287 NA non-coding downstream 578374 43597596 ~ 43601872 (+)
XLOC_032289 BX119974.1 non-coding downstream 1113746 44132968 ~ 44133082 (+)
XLOC_032292 NA non-coding downstream 1381420 44400642 ~ 44805588 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_10975991_10979709 TCTA coding CI01000340 null 10975311 ~ 10980045 (+)