XLOC_032282


Basic Information

Item Value
gene id XLOC_032282
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43341943 ~ 43347573 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064937
gtttgatttaaatcctacatgGCGCCTCATACGATCAACTCAATCTCTGAAAATGTATGAAGAACAttaaaacctgccatgtgaaaaacagCGCCTATCTTAGCTTGGTTTGAACACCAAAAGAGGTGAAGGCTTTAGTGGAGAAGAGTAAATGTACCCGCCCCTATGACGTCACCACCGGACCTGGTTGAAACCAAGGCTGAAACAGGGGCGGACTTACCATAGACAGCACCAGGACATTTCACGTTGACCTAATGGTCAATCTGGAGTGCCACCGTGAATCTGGACCAATCGCCCACCACCAAGCGTAAAAGGCAGTCCATTGAGTCCTGAGTGTCTTCTGGATGGACCTGATTGGGGTCAGCAGATCCTCCACTGTGAACATCTGGAGGGCCCTGATCCGCATCAGCAGATCCTCCACTGGGAACATATGGAGGAACCTGATCCACACTGGCAGATCCTCCACTAGGAACGTCTGGAGTGACCTGATCCACACCAGCAGATCCTCCACGAGGTACGTCAGGAGGGACCTGATCCACACCAGCAGATCCTCCACAAGGTACGTCAGGAGGGACCTGTTCCACACCAGCAGATCCTCCACGAGGTACATCTGGAGGGACCTGTTTCACACTGGCAGGTTCCACGTGGAGGACGCTTCCACAGATGTGCctgagttttaattgaagtggGAGCTGGTTTGCCAGCTCCTCAATAGTGCCTGCATAGAAATGTACAGGCACTATGTACTCATCCATATGGCTATCCAGGAGGATGAGCTTGTCGTGCATCTCTGACACTCCAACGATCTTTAGAACTGCCTCCTGGATATCCCTATCAAtaagctgaaaaacaaaaaaaattttagaAAAGGTGACTGAGCTCAATGATGTCCCCGACATAGAGCTCGTTAAGTGCTTCTTCCCGCCACAGTGAGACATCATGTACTACGGAGCCACATTTCATCCGCAGGTCCAGGATCGGTATGTGAGTGCGAGTCATTCTAGGCGCTTCAACCTGGAAAATGACAAAAAGGTAAgtactatagtgtttttatttattttttttcttaatcctGACACAAGAATTTACTGTCATTGAGTCGGACTGTATGTTTTGGTGATTTGAAATGTCAACATTAGCAGAAATCGcctgtctaaagacatgcggtacagctgaattgggtagagtaaattgtctgttgtgaatgaatgtatatgtatgagtggatgttttccagagatggctgtcagctggaagggcatctgctgcgtaaaacaaatgctggataagttagcggttcattctgctgtagcgacccccaaattaataaagggactaagccgaaaagaaaatgaatgaatgaattcacttaCTTTTTCTAACTGCCCCCGTAGACTCAGGTACCCAGTTTCACTGAAGATATCCTCTTCCTCTCCTGTTATAGGTCGTGAATGAGGACAGAGGGCCTCCCTTGCAGCTCTTTTAGCCTCCTCACTTATGGCTAGCGGAGCCGTCCTAAATTTGATGGTgcctttatttacaaataaacatcGGCGGCCGTATTTGTTTGAGATggttacattttttacaatatatgaGTGTCCCTCTTCAAATTCAGGGTCACTGCCGTTTTTTATGGACAGATAAACTGCATCACCATCCGTAAGGGCACATAAAGATGTGACTTTGTAGGTGtcaacaattattttgttttcatgtttaataaatgtcaAAGCCTTTTGGCTACTGTGCACTTTAACACAGGTGATGTGCAGTGGTGGTGGGCGGCTGTACGGTGTTGCCATCCTAAGAATAAGAAAAAAAGGTTACTTTGTATTAGTTGTAAATATTATGTAGAATAaattataatttctttttaactCAATTCATCAATTAAACATATCAATCTAAATCTGTTTGTCTTGACTGGAATGTTGTGCTACATCCTCCTTCAAAATatcatatattgtgttttatagaaGAGAGAAACTCAAAGATTTGTAAGCATATAAGGGGG
>TCONS_00063036
GACTATCTTTGGCGCGTCTGCTAAATAGGTTAATAACCCTCTGATGCTGAGTGAGCTTCTCTTTCATTATGACCAGGGGCGGACTTACCATAGACAGCACCAGGACATTTCACGTTGACCTAATGGTCAATCTGGAGTGCCACCGTGAATCTGGACCAATCGCCCACCACCAAGCGTAAAAGGCAGTCCATTGAGTCCTGAGTGTCTTCTGGATGGACCTGATTGGGGTCAGCAGATCCTCCACTGTGAACATCTGGAGGGCCCTGATCCGCATCAGCAGATCCTCCACTGGGAACATATGGAGGAACCTGATCCACACTGGCAGATCCTCCACTAGGAACGTCTGGAGTGACCTGATCCACACCAGCAGATCCTCCACGAGGTACGTCAGGAGGGACCTGATCCACACCAGCAGATCCTCCACAAGGTACGTCAGGAGGGACCTGTTCCACACCAGCAGATCCTCCACGAGGTACATCTGGAGGGACCTGTTTCACACTGGCAGGTTCCACGTGGAGGACGCTTCCACAGATGTGCctgagttttaattgaagtggGAGCTGGTTTGCCAGCTCCTCAATAGTGCCTGCATAGAAATGTACAGGCACTATGTACTCATCCATATGGCTATCCAGGAGGATGAGCTTGTCGTGCATCTCTGACACTCCAACGATCTTTAGAACTGCCTCCTGGATATCCCTATCAAtaagctgaaaaacaaaaaaaattttagaAAAGGTGACTGAGCTCAATGATGTCCCCGACATAGAGCTCGTTAAGTGCTTCTTCCCGCCACAGTGAGACATCATGTACTACGGAGCCACATTTCATCCGCAGGTCCAGGATCGGTATGTGAGTGCGAGTCATTCTAGGCGCTTCAACCTGGAAAATGACAAAAAGGTCGTGAATGAGGACAGAGGGCCTCCCTTGCAGCTCTTTTAGCCTCCTCACTTATGGCTAGCGGAGCCGTCCTAAATTTGATGGTgcctttatttacaaataaacatcGGCGGCCGTATTTGTTTGAGATggttacattttttacaatatatgaGTGTCCCTCTTCAAATTCAGGGTCACTGCCGTTTTTTATGGACAGATAAACTGCATCACCATCCGTAAGGGCACATAAAGATGTGACTTTGTAGGTGtcaacaattattttgttttcatgtttaataaatgtcaAAGCCTTTTGGCTACTGTGCACTTTAACACAGGTGATGTGCAGTGGTGGTGGGCGGCTGTACGGTGTTGCCATCCTAAGAATAAGAAAAAAAGGTTACTTTGTATTAGTTGTAAATATTATGTAGAATAaattataatttctttttaactCAATTCATCAATTAAACATATCAATCTAAATCTGTTTGTCTTGACTGGAATGTTGTGCTACATCCTCCTTCAAAATatcatatattgtgttttatagaaGAGAGAAACTCAAAGATTTGTAAGCATATAAGGGGG

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0045596 negative regulation of cell differentiation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0009996 negative regulation of cell fate specification biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064937 False 2017 lncRNA 0.44 4 43341943 43347573
TCONS_00063036 True 1473 lncRNA 0.45 4 43342179 43347573

Neighbor

gene id symbol gene type direction distance location
XLOC_032281 arl6ip5a coding upstream 100312 43234213 ~ 43241631 (+)
XLOC_032280 tcta coding upstream 322721 43015916 ~ 43019222 (+)
XLOC_032279 gnat1 coding upstream 411641 42918933 ~ 42930302 (+)
XLOC_032278 sema3fa coding upstream 425600 42818963 ~ 42916343 (+)
XLOC_032277 NA coding upstream 590184 42692622 ~ 42751759 (+)
XLOC_032283 BX927362.2 coding downstream 5698 43353271 ~ 43361226 (+)
XLOC_032284 mitfa coding downstream 42814 43390387 ~ 43433277 (+)
XLOC_032285 zgc:113054 coding downstream 102648 43450221 ~ 43474757 (+)
XLOC_032286 NA coding downstream 151407 43498980 ~ 43546988 (+)
XLOC_032287 NA coding downstream 250023 43597596 ~ 43601872 (+)
XLOC_032275 NA non-coding upstream 675935 42656713 ~ 42666008 (+)
XLOC_032274 BX005129.3 non-coding upstream 688518 42646411 ~ 42653425 (+)
XLOC_032273 BX005129.5 non-coding upstream 698910 42635960 ~ 42643033 (+)
XLOC_032272 BX005129.4 non-coding upstream 719291 42618902 ~ 42622652 (+)
XLOC_032289 BX119974.1 non-coding downstream 785395 44132968 ~ 44133082 (+)
XLOC_032292 NA non-coding downstream 1053069 44400642 ~ 44805588 (+)
XLOC_032293 NA non-coding downstream 1373619 44721192 ~ 44797559 (+)

Expression


Co-expression Network