G1330106 (lrp6)


Basic Information

Item Value
gene id G1330106
gene name lrp6
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80878820 ~ 80879403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1519955
CCCGGGTCCAGAGAGATGGCTCGGGGCTGGTCCAGGTCCTGCCAGAAGAGAACTCTCCGTAACGATCCATCCAGCTCGGCCACCTCTATCCGATTGGTCTCGGAGTCCGTCCAGTACAGCTTCCTGCCTAACCAGTCACAGGCCAGGCCGTCCGGGGACGCCAGCCCCGATACAACCACCGTCTGGGCGGCCGCCGCCGAGCCGGGCCCTGATTGGTTGAAGGTGGTGCGTTTGATTGCCTCCTCGCTGACGTCACTCCAGTAGACCAATCCCTGAGCGTATACGTAGTCCACAGCGGCGGCGTCCTCCAGACCGCCCACCACCACCGTGGCGTTGGCCCTGCCGTGAGCCGCATCCACCAGCCGCAGGTCCCGTCGGTTAGCATAGAGCAGGAGGGGTACACCTGGTGGGGGAGGGGGTAAGGTCAGACAGAGATACTATACAGTACGTAGAACAGGAGGGGTCCACCTGGTGGGGGAGGGGGTAGGGTCAGACAGAAATACTATACAGTCCTACAACACCCCTACAGTACTACAACACCCCTACAACACCCCTACAACAATACCcctacagtaccccccccc
>TU1519954
CCCGGGTCCAGAGAGATGGCTCGGGGCTGGTCCAGGTCCTGCCAGAAGAGAACTCTCCGTAACGATCCATCCAGCTCGGCCACCTCTATCCGATTGGTCTCGGAGTCCGTCCAGTACAGCTTCCTGCCTAACCAGTCACAGGCCAGGCCGTCCGGGGACGCCAGCCCCGATACAACCACCGTCTGGGCGGCCGCCGCCGAGCCGGGCCCTGATTGGTTGAAGGTGGTGCGTTTGATTGCCTCCTCGCTGACGTCACTCCAGTAGACCAATCCCTGAGCGTATACGTAGTCCACAGCGGCGGCGTCCTCCAGACCGCCCACCACCACCGTGGCGTTGGCCCTGCCGTGAGCCGCATCCACCAGCCGCAGGTCCCGTCGGTTAGCATAGAGCAGGAGGGGTACACC

Function

symbol description
lrp6 Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Acts upstream of or within with a positive effect on Wnt signaling pathway involved in dorsal/ventral axis specification and canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in posterior lateral line primordium. Human ortholog(s) of this gene implicated in tooth agenesis. Orthologous to human LRP6 (LDL receptor related protein 6).

NR:

description
low-density lipoprotein receptor-related protein 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1519955 False 584 TUCP 0.62 1 80878820 80879403
TU1519954 True 404 TUCP 0.65 1 80879000 80879403

Neighbor

gene id symbol gene type direction distance location
LOC118936542 LOC106592443 coding downstream 487079 80370567 ~ 80391741 (-)
LOC110516866 NA coding downstream 508329 80369309 ~ 80370531 (-)
LOC110516867 LOC106594631 coding downstream 530933 80286961 ~ 80347887 (-)
LOC110517959 LOC106593769 coding downstream 609981 80242189 ~ 80268839 (-)
LOC118938881 LOC106593769 coding downstream 637742 80235130 ~ 80241078 (-)
LOC110515349 crbl2 coding upstream 237793 81117196 ~ 81119754 (-)
LOC118938883 NA coding upstream 318919 81196824 ~ 81199165 (-)
LOC118938884 NA coding upstream 462511 81341914 ~ 81343353 (-)
LOC110517956 LOC106595484 coding upstream 506627 81386030 ~ 81495207 (-)
LOC110511600 gns coding upstream 654719 81534122 ~ 81554017 (-)
G1330103 NA non-coding downstream 4802 80873591 ~ 80874018 (-)
G1330102 NA non-coding downstream 5397 80873185 ~ 80873423 (-)
G1330042 NA non-coding downstream 7101 80871472 ~ 80871719 (-)
G1330040 NA non-coding downstream 9980 80867331 ~ 80868840 (-)
G1330032 NA non-coding downstream 32917 80845219 ~ 80845903 (-)
G1330122 NA non-coding upstream 29401 80908804 ~ 80909062 (-)
G1330123 NA non-coding upstream 30143 80909546 ~ 80909857 (-)
G1330140 NA non-coding upstream 72890 80952293 ~ 80953561 (-)
G1330141 NA non-coding upstream 75396 80954799 ~ 80955293 (-)
G1330143 NA non-coding upstream 78447 80957850 ~ 80959318 (-)
G1329894 NA other downstream 326335 80552234 ~ 80552485 (-)
G1329752 NA other downstream 524507 80348261 ~ 80354313 (-)
G1329798 NA other downstream 525179 80352703 ~ 80353641 (-)
G1330142 NA other upstream 76128 80955531 ~ 80957790 (-)
G1330168 NA other upstream 125469 81004872 ~ 81006072 (-)
G1330352 NA other upstream 370874 81250277 ~ 81251251 (-)

Expression


Co-expression Network