G1330140


Basic Information

Item Value
gene id G1330140
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80952293 ~ 80953561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1519996
TCCAGACAGGATAGATAACCCCCCCTCAGTACCAGATGTGTTCTGGGTCTGTCCCATCCAGACAGGATAGATAACCCCCTCAGTACCAGATGTGTTCTGGGTAAAGATAATCTTCAGTTGCAGTCTGGcatttaaaacaaaaacatacagaaaaatataaaataaccTCAAATGACAGAACATAGATTTTGGTTGAATATTGTGCAGTAATAACCTCATCAGATGTGAGAATCTGTTTCCCCATCACACAACAGACCTTCTGACCTTCTGTGAACCCTGACCTCCACCTCTGTACCCCACCCCTTCCTGGACCTATGGGTCGGGTCAGGAGTGTTGTGGTAGTGACGAGGGGCCCCGGGTCGGGTCAGGAGTGTTGTGGTAGTGACGAGGGGCCCCGGGTCGGGTCAGGAGTGTTGTGGTAGTGACGAGGGGCCCTGGGTCGGGTCAGGAGTGTTGTGGTAGTGACGAGGGGCCCCGGGTCGGGTCAGGAGTGTTGTGGTAGTGACGAGGGGCCCTGGGTCCGGTCAGGAGTGTTGTGGTAGTGACGAGGGGCCCTGGGTCGGGTCAGGAGTGTTGTGGTAGTGACGAGGGGCCCTGGGTCGGGTCAGGAGTGTTGTGGTAGTGACGAGGGGCCCTGGGTCGGGTCAGAGGTTCTTTATGTACCCTGTTAGATGAATAAGGAGCTTGTATAATATGTAGTACCTAGTTGAAGCAATACAAGCGGACAGGAAGTCCTGGGAAACCAGGAAACCATTAGAAAGGAGCTCAAATCAACATTTCTGTTACTATGGAAACCAGCTGACTGGTTACTATGGGGATCACTGATCCACTACAAAATGGCTGCCCAGGCTGCAGAGTGCCGTGGTGCAGTAGCTGTCTGTCACCTCCAGGGGGCGTCATCCTGCCTCACCACTCCCTCCATCCATTGTTCCGGGCGTTGTCACGGTGTGTTATTTGGCGTCAGATAGTTCCATCTACGTGTTTTAAATGTTCTTCCAGCCTTCGTAAAAACAGACAACTGTTTGTATCTTCTGGATTTAAGGCAACTTATCATGTTTGTGATGGTTTTAATAAAACGTtttcattaaaaaataaaaaataaatgtacaaatgTTTGAATACAAACCTCTACGGCGTATCCAGTAAACGCTGTATAGAAAATATATAGATATGCTTTTTTCTATTTTTAAAATGTACAAATGTTCCCGGAGCTCTTTCTTCCACCCCGAGCTTCCTGTTTCTCTGTTCATATGTTCTGTAcatccctca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1519996 True 1269 lncRNA 0.48 1 80952293 80953561

Neighbor

gene id symbol gene type direction distance location
LOC118936542 LOC106592443 coding downstream 560552 80370567 ~ 80391741 (-)
LOC110516866 NA coding downstream 581802 80369309 ~ 80370531 (-)
LOC110516867 LOC106594631 coding downstream 604406 80286961 ~ 80347887 (-)
LOC110517959 LOC106593769 coding downstream 683454 80242189 ~ 80268839 (-)
LOC118938881 LOC106593769 coding downstream 711215 80235130 ~ 80241078 (-)
LOC110515349 crbl2 coding upstream 163635 81117196 ~ 81119754 (-)
LOC118938883 NA coding upstream 244761 81196824 ~ 81199165 (-)
LOC118938884 NA coding upstream 388353 81341914 ~ 81343353 (-)
LOC110517956 LOC106595484 coding upstream 432469 81386030 ~ 81495207 (-)
LOC110511600 gns coding upstream 580561 81534122 ~ 81554017 (-)
G1330123 NA non-coding downstream 42436 80909546 ~ 80909857 (-)
G1330122 NA non-coding downstream 43231 80908804 ~ 80909062 (-)
G1330103 NA non-coding downstream 78275 80873591 ~ 80874018 (-)
G1330102 NA non-coding downstream 78870 80873185 ~ 80873423 (-)
G1330042 NA non-coding downstream 80574 80871472 ~ 80871719 (-)
G1330141 NA non-coding upstream 1238 80954799 ~ 80955293 (-)
G1330143 NA non-coding upstream 4289 80957850 ~ 80959318 (-)
G1330147 NA non-coding upstream 11392 80964953 ~ 80970599 (-)
G1330155 NA non-coding upstream 26891 80980452 ~ 80982314 (-)
G1330157 NA non-coding upstream 34707 80988268 ~ 80989878 (-)
G1330106 lrp6 other downstream 72890 80878820 ~ 80879403 (-)
G1329894 NA other downstream 399808 80552234 ~ 80552485 (-)
G1329752 NA other downstream 597980 80348261 ~ 80354313 (-)
G1330142 NA other upstream 1970 80955531 ~ 80957790 (-)
G1330168 NA other upstream 51311 81004872 ~ 81006072 (-)
G1330352 NA other upstream 296716 81250277 ~ 81251251 (-)

Expression


Co-expression Network