XLOC_003229


Basic Information

Item Value
gene id XLOC_003229
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7880142 ~ 7971030 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008547
CTGGAGCAGCAAACTTGCCTCTGTCACTTTTAGACGCAGCTGAATATCTGTCCATCCTGCTTGGAATAACAATCACTATTACAAGatccTGCCAACTGCTCTTTGGACGTCTGATGACCATACTGTGTCTGATTGTTGGATGACAGCTTAACTATTTCTTCAGTTCGCTCAGTCCACTGGGAATGTTAAGGGCCCCGAGCGCTCCAATATTTGGAAGTGAACAAAAACTTCCCTTGTGAGCCTGGAAAATGTTTATCATCACAGTCAAAGGCTTGGCTCTCCGTCATGGCGTTCTGCCGCTGATGGAGAAGGTAGTTTGGTATGACGGAGACAGCTGTGAAGTCTCTTTTTAAGAGGAAGCTGTTGTAGGCCAGCTCACACCTGTAACATGTCACTCAAGGACTGTCAACACAAATAACGCTCATTAATCATGTTTATAAAAGCATTAATCTCACGGCTGGGTGGATAAAATGTGTTTTTCCACTGGTAAGTTGAGCGGCTTGATCTGTGTTAATGTATCTcgtaatgattttttaaattcctCTTGGAGGCCCTGGATAATGAGATACTTCTTTAACGTCAAATATAGTCGTGACATTTCGTTTCTGCTTTATTTAGGCTGAAATGTAAAACTTCAAGCATCACAGTTGACGCTCTGACATGAAAGAGCTGGAGTTTTCAGGCATTTTATCTTCGTATGTCATCAGCCAACAAACGCTCAGTGCCAAATTTCACAGCTGATAAGATTTATTCACCGAAAGATTATTATTCAATGGATAAGAGCTGAAGTTATGCATATGATGATAGAAAAGTGAATAAGCCATGACAGCATGGTGATAATAAAATGCAATGAAACACCgtgatttaaaactgaataaCTTGAGTATCTCAGAAATTACTTAGGAGCATGTTGCAATGCAGAGACTGTATAATGTAATACATTATAGGGGAGACTGGGATTAGCTGTCACGCTTATTAATCAAATGAATATTTCTC
>TCONS_00006368
GCAGCTGAATATCTGTCCATCCTGCTTGGAATAACAATCACTATTACAAGGTCAGAGcagttttaatgtatttatttcatttctcaGGGatccTGCCAACTGCTCTTTGGACGTCTGATGACCATACTGTGTCTGATTGTTGGATGACAGCTTAACTATTTCTTCAGTTCGCTCAGTCCACTGGGAATGTTAAGGGCCCCGAGCGCTCCAATATTTGGAAGTGAACAAAAACTTCCCTTGTGAGCCTGGAAAATGTTTATCATCACAGTCAAAGGCTTGGCTCTCCGTCATGGCGTTCTGCCGCTGATGGAGAAGGTAGTTTGGTATGACGGAGACAGCTGTGAAGTCTCTTTTTAAGAGGAAGCTGTTGTAGGCCAGCTCACACCTGTAACATGTCACTCAAGGACTGTCAACACAAATAACGCTCATTAATCATGTTTATAAAAGCATTAATCTCACGGCTGGGTGGATAAAATGTGTTTTTCCACTGTCGCTCGGTGAGGAATTAAGACCGGGGTGAGAAAGCCAGGAGAGAAAGTACGGAGATGTCtaaggttttttttgtttttttcttgacaGGAAGACGTTTGCATTCTCCTGCGGGCATCAACTCCCTCTTGAGTAA
>TCONS_00008548
GTTGCAGGGTGGCTGAATGTTCCAACAGatccTGCCAACTGCTCTTTGGACGTCTGATGACCATACTGTGTCTGATTGTTGGATGACAGCTTAACTATTTCTTCAGTTCGCTCAGTCCACTGGGAATGTTAAGGGCCCCGAGCGCTCCAATATTTGGAAGTGAACAAAAACTTCCCTTGTGAGCCTGGAAAATGTTTATCATCACAGTCAAAGGCTTGGCTCTCCGTCATGGCGTTCTGCCGCTGATGGAGAAGGTAGTTTGGTATGACGGAGACAGCTGTGAAGTCTCTTTTTAAGAGGAAGCTGTTGTAGGCCAGCTCACACCTGTAACATGTCACTCAAGGACTGTCAACACAAATAACGCTCATTAATCATGTTTATAAAAGCATTAATCTCACGGCTGGGTGGATAAAATGTGTTTTTCCACTGGTAAGTTGAGCGGCTTGATCTGTGTTAATGTATCTcgtaatgattttttaaattcctCTTGGAGGCCCTGGATAATGAGATACTTCTTTAACGTCAAATATAGTCGTGACATTTCGTTTCTGCTTTATTTAGGCTGAAATGTAAAACTTCAAGCATCACAGTTGACGCTCTGACATGAAAGAGCTGGAGTTTTCAGGCATTTTATCTTCGTATGTCATCAGCCAACAAACGCTCAGTGCCAAATTTCACAGCTGATAAGATTTATTCACCGAAAGATTATTATTCAATGGATAAGAGCTGAAGTTATGCATATGATGATAGAAAAGTGAATAAGCCATGACAGCATGGTGATAATAAAATGCAATGAAACACCgtgatttaaaactgaataaCTTGAGTATCTCAGAAATTACTTAGGAGCATGTTGCAATGCAGAGACTGTATAATGTAATACATTATAGGGGAGACTGGGATTAGCTGTCACGCTTATTAATCAAATGAATATTTCTC

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000101568

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008547 False 996 lncRNA 0.40 2 7880142 7954546
TCONS_00006368 False 625 lncRNA 0.44 3 7880177 7971030
TCONS_00008548 True 939 lncRNA 0.40 2 7907007 7954546

Neighbor

gene id symbol gene type direction distance location
XLOC_003228 NA coding upstream 54070 7825353 ~ 7826072 (+)
XLOC_003227 CR450813.2 coding upstream 96828 7782514 ~ 7783314 (+)
XLOC_003226 adgrl2a coding upstream 142500 7432533 ~ 7737642 (+)
XLOC_003225 diras1a coding upstream 538335 7324704 ~ 7341807 (+)
XLOC_003224 NA coding upstream 593832 7281239 ~ 7286310 (+)
XLOC_003230 prkacba coding downstream 158506 8129536 ~ 8150894 (+)
XLOC_003231 samd13 coding downstream 181842 8152872 ~ 8161149 (+)
XLOC_003232 dnase2b coding downstream 199918 8170948 ~ 8179145 (+)
XLOC_003233 tbl1xr1a coding downstream 594293 8565323 ~ 8682447 (+)
XLOC_003234 CR847563.1 coding downstream 607024 8578054 ~ 8580557 (+)
XLOC_003250 BX324177.11 misc downstream 3374773 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 3401856 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 3415332 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 3447003 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 3458363 11429393 ~ 11429689 (+)
XLOC_003217 NA non-coding upstream 728135 7149071 ~ 7152007 (+)
XLOC_003218 CU929070.2 non-coding upstream 729236 7150820 ~ 7150906 (+)
XLOC_003235 NA non-coding downstream 704939 8675969 ~ 8677720 (+)
XLOC_003236 CABZ01079837.1 non-coding downstream 1540503 9511533 ~ 9522073 (+)
XLOC_003237 NA non-coding downstream 1630715 9601745 ~ 9603070 (+)
XLOC_003238 BX005472.1 non-coding downstream 1927483 9898513 ~ 9898630 (+)

Expression


Co-expression Network