G1330380


Basic Information

Item Value
gene id G1330380
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 81378751 ~ 81381054 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1520360
catgtacTCATTCTGGAAcaactctgtttctccatgtacTCATTCTGGAAcaactctgtttctccatgtacCACCCACTCATTCTGGAAcaactctgtttctccatgtacTCATTCTGGAAcaactctgtttctccatgtacTCATTCTGGAAcaactctgtttctccatgtacTCATTCTGGAACAACTCAGTTTCTCCATGTACCACCCACTCATTGTGTAACTGGAGTGTGTCAGTGAGCGTAACATGAGCCAGAAGAGCCTAGTTGAGGTTATTCTATCATAGCTGCAGTAACACGTCCTTTTGGAGCAAAATGGAAGGGTTTTACTGCATGTTATCTTCCTGCTGGAGCAGCAAGGGTACATCCCAAAttacaacctattccctatatagtgcactactataaaccagagccctattccctatatagtacactactataaaccagggccctattccctatatagtgcactactataaaccagagccctattccctatatagtgcactactataaaccagagccctattccctatatagtacactactataaaccagggccctattccctatatagtacactactttagaccagggccctattccctatatagtacactactttagactagggccctattccctatatagtgctctactttagaccagagccctattccctatatagtgcactactgtttcccaactccagtacccccaacagcccaactacagtaccctcaacagcccaactccagtaccctccaacagcccaacttcagtaccccaacagcccaactccagtaccccaacagcccaacaccagtaccccaacagcccaactccagtagcCCAACACCAGTAGCCCAACAGTccaactccagtaccccaacagcccaactccagtaccccaacagcccaactccagtaccccaacagcccaactccagtaccccaacagcccaactcagtaccccaacagcccaacaccagtaccccaacagcccaactccagtaccccaacagcccaactccagtaccccaacagcccaacaccagtaccccaacagcccaacaccagtaccccaacagcccaactccagtaccccctggacaaaaacacctgattcaacttgtcaaggcAAGTTGGGCGTCAAATAGAATCAGGTGCTTCTCTGGGGCCACAACAAACATATgtactgttggggatactggaggaccggagttgggctgttgggagtactggaggactggagttgggctgttggggatactggaggactggagttgggctgttgggagtactggaggaccggagttgggctgttgggagtactggaggaccggagttgggaaacactgccctagagaatagggtgccatttgggatgcaggcagaAAGCCAGTGTGTGGAGGGTCGGGTACTGTATGACTGGCTGGAACCAGGGAGGGATGACTGGCTGTCACAGCTACTGACAGACAAAACACAGACGTTACTCGTCGGGTACTGTATATGACTGGCTGTCACAGCTACTGACAGACAAAACACAGACGTTACTCGTCGGGTACTGTATATGACTGGCTGTCACAGCTACTGACAGACAAAACACAGACGTTACTCGTCGGGTACTGTATATGACTGGC

Function

NR:

description
PREDICTED: bifunctional endo-1,4-beta-xylanase XylA-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1520360 True 1647 lncRNA 0.49 2 81378751 81381054

Neighbor

gene id symbol gene type direction distance location
LOC118938884 NA coding downstream 35398 81341914 ~ 81343353 (-)
LOC118938883 NA coding downstream 179774 81196824 ~ 81199165 (-)
LOC110515349 crbl2 coding downstream 258997 81117196 ~ 81119754 (-)
LOC118936542 LOC106592443 coding downstream 987010 80370567 ~ 80391741 (-)
LOC110516866 NA coding downstream 1008260 80369309 ~ 80370531 (-)
LOC110517956 LOC106595484 coding upstream 4976 81386030 ~ 81495207 (-)
LOC110511600 gns coding upstream 153068 81534122 ~ 81554017 (-)
G1330407 NA non-coding downstream 1786 81374106 ~ 81376965 (-)
G1330405 NA non-coding downstream 15625 81362447 ~ 81363126 (-)
G1330404 NA non-coding downstream 16705 81361844 ~ 81362046 (-)
G1330392 LOC106594571 non-coding downstream 33129 81337635 ~ 81345622 (-)
G1330393 LOC106593802 non-coding downstream 44627 81330234 ~ 81334124 (-)
G1330416 NA non-coding upstream 15693 81396747 ~ 81398070 (-)
G1330420 NA non-coding upstream 19411 81400465 ~ 81400766 (-)
G1330423 NA non-coding upstream 20779 81401833 ~ 81402150 (-)
G1330486 NA non-coding upstream 59707 81440761 ~ 81441057 (-)
G1330352 NA other downstream 127500 81250277 ~ 81251251 (-)
G1330168 NA other downstream 372679 81004872 ~ 81006072 (-)
G1330142 NA other downstream 420961 80955531 ~ 80957790 (-)

Expression


Co-expression Network