XLOC_032295


Basic Information

Item Value
gene id XLOC_032295
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 44987628 ~ 45083289 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064682
AATTTTCTTAATTATCTGACAAACTCTGTTCATGGCAACTGAACTTTTCCAAGTTGTCGAGCTGTTCTAAAGTTACTGAAACCCCCTGACAGCAGGTTGTCCAGATAAAGAGCCAAGGGATGAACCTTCCTGCCATAGCAAGAAAAGTTGCTTGTCCAAATCTGTGATTGTTAGAGTACTGAATCTTTACAGGAACACTCATTCAAACCCAAGAGGACTGGATTATGCACACAATCTTAAACACTTCAGCTGGAATAGCTCAAGAAGTTGAACTCTAAAACAGctgatgaacaataaaaacactga
>TCONS_00064949
AATTTTCTTAATTATCTGACAAACTCTGTTCATGGCAACTGAACTTTTCCAAGTTGTCGAGCTGTTCTAAAGTTACTGAAACCCCCTGACAGCAGGTTGTCCAGATAAAGAGCCAAGGGATGAACCTTCCTGCCATAGCAAGAAAAGTTGCTTGTCCAAATCTGTGATTGTTAGAGTACTGAATCTTTACAGGAACACTCATTCAAACCCAAGAGGACTGGATTATGCACACAATCTTAAACACTTCAGCTGGAATAGCTCAAGAAGTTGAACTCTAAAACAGctgatgaacaataaaaacactgacAGGCAATCAGAATCCACTTGACTTGAAAGAgcttgagtgttttttttaaagctgctggCCGCCAAACCTACAGTTAAACAGCAGTCTTGCATATGCAGCCGCAATAATCAGATCCACTCACACAGCTTCAGATATGAGACAGCAGAAGCGCCGGTGGCCCATCGAGGATTCCTCATTATGTCGAATTGAGCTTGGGGTTGCAGAGCTCGCTGCAATAATCCCATGCCTCACTGCTGAGCTCATTCCAGGATAACATTGCTAATGAGCTCACATCTTTCCCCTGCGCTCGTGCAGAGATGCTGGCAGCATGTGTGCGTAATATGTGCACCTCTCCGTGTTTCAGCACAGGATCAGAGGGAGAAAGCAGGAGTCGAGTCCCCTGAAGTGAAGAGCCTCAGTGTCTTGGATGCGCTTTTGCTGTGCGCTTGACATGCTAACCCAATTGTGCCTCCAGGATAGGGAATAAAACCTGCCAATGCAATGCA
>TCONS_00064950
GTCGAGCTGTTCTAAAGTTACTGAAACCCCCTGACAGCAGGTTGTCCAGATAAAGAGCCAAGGGATGAACCTTCCTGCCATAGCAAGAAAAGTTGCTTGTCCAAATCTGTGATTGTTAGAGTACTGAATCTTTACAGGAACACTCATTCAAACCCAAGAGGACTGGATTATGCACACAATCTTAAACACTTCAGCTGGAATAGCTCAAGAAGTTGAACTCTAAAACAGGTTAAACAGCAGTCTTGCATATGCAGCCGCAATAATCAGATCCACTCACACAGCTTCAGATATGAGACAGCAGAAGCGCCGGTGGCCCATCGAGGATTCCTCATTATGTCGAATTGAGCTTGGGGTTGCAGAGCTCGCTGCAATAATCCCATGCCTCACTGCTGAGCTCATTCCAGGATAACATTGCTAATGAGCTCACATCTTTCCCCTGCGCTCGTGCAGAGATGCTGGCAGCATGTGTGCGTAATATGTGCACCTCTCCGTGTTTCAGCACAGGATCAGAGGGAGAAAGCAGGAGTCGAGTCCCCTGAAGTGAAGAGCCTCAGTGTCTTGGATGCGCTTTTGCTGTGCGCTTGACATGCTAACCCAATTGTGCCTCCAGGATAGGGAATAAAACCTGCCAATGCAATGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064682 False 306 lncRNA 0.39 2 44987628 45016837
TCONS_00064949 False 792 lncRNA 0.46 3 44987628 45083289
TCONS_00064950 True 641 lncRNA 0.48 2 44987683 45083289

Neighbor

gene id symbol gene type direction distance location
XLOC_032294 chl1b coding upstream 10200 44812444 ~ 44977428 (+)
XLOC_032292 NA coding upstream 182040 44400642 ~ 44805588 (+)
XLOC_032293 NA coding upstream 190069 44721192 ~ 44797559 (+)
XLOC_032291 ppp4r2b coding upstream 778238 44197099 ~ 44209390 (+)
XLOC_032290 gxylt2 coding upstream 793888 44163727 ~ 44193740 (+)
XLOC_032296 BX942846.1 coding downstream 31324 45114613 ~ 45328910 (+)
XLOC_032297 LO017951.1 coding downstream 263519 45346808 ~ 45376758 (+)
XLOC_032298 CABZ01009812.1 coding downstream 272120 45355409 ~ 45355525 (+)
XLOC_032299 cntn4 coding downstream 410938 45494227 ~ 45838103 (+)
XLOC_032300 LO018004.1 coding downstream 521991 45605280 ~ 45605396 (+)
XLOC_032289 BX119974.1 non-coding upstream 854546 44132968 ~ 44133082 (+)
XLOC_032287 NA non-coding upstream 1385756 43597596 ~ 43601872 (+)
XLOC_032286 NA non-coding upstream 1440640 43498980 ~ 43546988 (+)
XLOC_032304 BX663614.1 non-coding downstream 942557 46025846 ~ 46025963 (+)
XLOC_032306 NA non-coding downstream 1226447 46309736 ~ 46320528 (+)
XLOC_032314 CU639408.1 non-coding downstream 1666217 46749506 ~ 46749624 (+)

Expression


Co-expression Network