LOC110491242 (LOC106578741)


Basic Information

Item Value
gene id LOC110491242
gene name LOC106578741
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 132282 ~ 150267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945884.1
ACTCACACACGTTTTTTACTAAACTAATGCTGTTGATCATGTAGTGGTTCTACTGAGTTCTGTTGACGAGGGTTGATCAGTGATCAGGGTAGATCAGTGAGGACATCATTGTTATCAGAGCACATCTCCTTGATACCTCCAATTTGTAGAAGAAAGGTCCTGATATGGAGACAGCAGCCTATGTATCAGTAGGAGAAAGGTCCTGATATGGAGAGCAGCTTACTCAGCAGTTTAGGTCCAACAGTCCTTTGGATTAGGAGGAAGTGTGTGCTGGAGAGCAAATGAGTATTGGAGtcacagaagacagagagagaacgattGagggAGGAATGCTATGGCGGTGTCTCAGAGTAGTGTTAGTACGTGGAGCAGTAAGCAGGTGTCTGGCTGGCTGAAGCAGGAGGGGTTTGGGCAGTATGTGGAGCTGCTGTGTTCTAAACATCGTGTGGATGGCCCCAGCCTGCTGACTCTAAGGGAGGCTGACCTGCGTGAACCCCCTCTGAGCCTCACTGTGCTGGGGGACATCAAGAGGCTGGCCCTGGCCCTGCGGAGGCTCCAAATACAGAACCAGAAGCAAATGGAGGAGctggggatagggttagggggatTAGGGGCTGCTGCTGGGGGGGACAGGGCCTGTCACGAGGAAGACTGGGGGGATCACAGGGCTGACAGGCGGTGTAATAGAGGAGATTGTGTGTGTAACGGGGCAGGGCGCCGTCAGGTGGATTGTGGGGTCTCAGGGTCATGGTCAGGGTCGCGACCCCGGTCAGGGATGGCGTTAGAAGAAGACCAGTGCCACATTCACTCCACTGGGGACAGGAAGTGCCTTCTAGGGCGTCTGGACCCAGAGCTGTGGAAGACAGTAGTCAGCTCTGTTTACGTCATGCTCGTCTTCGGATTTACCTCCTTCGTCATGGTGATCGTCCACGACCGCGTTCCCGATATGACAATTTACCCGCCACTGCCCGACATCTTCCTGGATAGTGTACCCAGAATCCCTTGGGCTTTTGCGATGGCGGAGGCTTGTGGTTTAATCCTAGTTTACATCTTCCTGTTGGTGCTACTACTACACAAACACaggtctatcATATTGCGGCGTCTGTGTTCTCTGATTGGAACAGTGTTTCTGCTGCGTTGCGTCACCATGTTTGTTACCTCCCTCTCTGTACCTGGACAACATCTACAGTGCTCCAGTAAGatgtatgGTGATACGTGGTCTAAGGTCCAGAGGGTGTTAGCTATATGGAGTGGCTTTGGCATGACGCTGAATGGAGTGGATACCTGTGGAGATTACATGTTCTCTGGTCACACTGTGGTACTCACCATACTCAACTTCTTCATCACAGAGTATACTCCTCGTAGCTGGCACCTGATCCATACCATCTCCTGGGTACTGAATCTGTTTGGTATCTTCTTCATCCTGGCGGCTCATGAGCACTACTCCATAGATGTGTTCATAGCTTTCTACatcaccaccagactgttcctGTATTACCACACTCTGGCCAACACCAGGGCCTTCCAACACAGCCGCCGTGCTCGGATCTGGTTTCCCATGTTCTCCTTCTTCGAGTGTAACGTCAACGGTCCTGTACATAACCAGTACAACTGGCCCTTTAGTGGGCCTGCCTGTATGAAGACACTGATTGGATAACAcaacgcagcacacacacacaaaggtaggGTTAGGCTTTAGTTAGTGTCAGGGTTCAATTGGCCAGATTTTAACTCCAACCTGGGGAATTAACTATGTTCTAGATTCTAAAGAATTGCATATTGTACTTTCAGTAATATACAGATAATGTATGGCTAGCAGTAGATATTGAGCTGTGTATAATGTATGGCTAGCAGTAGATATTGAGCTGTGTATAATGTATGGCTAGCAGTAGATATTGAGCTGTGTATAATGTATGGCTAGCAGTAGATATTGAGCTGTGTTTAATGTATGGCTAGCAGTAGATATTGAGCTGTGTATAATGTATGGCTAGCAGTAGATATTGAGCTATGTATAATGTATGTTGTTTATTGATGAGTTTAATCAGTTAGCTGTGTGGTAGTGTATGTAGCTGGCCATATTTAATGTATTGGAATCTGTGCTTCATTAACATCAtgtatgtacactgagtgtactagACATTAGGACTCTTTCcacgacatagactgaccaggtgaatcaaggtgaaagtattgatgtcacttgttaaatccacttcaattattgtagatgaaggagaggagacaggttaaagaaggatttttaagccttgagacaattgagacat

Function

NR:

description
sphingomyelin synthase-related protein 1-like

GO: NA

KEGG:

id description
K22697 SAMD8; sphingomyelin synthase-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945884.1 True 2285 mRNA 0.47 6 132282 150267

Neighbor

gene id symbol gene type direction distance location
LOC110491220 NA coding downstream 179897 330164 ~ 425574 (+)
LOC110517286 sipa1l2 coding downstream 308005 458272 ~ 775818 (+)
egln1a NA coding downstream 891671 1041938 ~ 1087375 (+)
nid1a LOC106578745 coding downstream 1008170 1158437 ~ 1239914 (+)
lyst LOC106578744 coding downstream 1097747 1248014 ~ 1490396 (+)
G1330550 NA non-coding upstream 19888 59122 ~ 112394 (+)
G1330578 NA non-coding upstream 50694 71401 ~ 81588 (+)
G1330548 LOC106591119 non-coding upstream 94157 24932 ~ 38125 (+)
G1330658 NA non-coding downstream 5984 156251 ~ 216307 (+)
G1330671 NA non-coding downstream 25060 175327 ~ 175911 (+)
G1330684 NA non-coding downstream 55376 205643 ~ 208826 (+)
G1330682 NA non-coding downstream 60689 210956 ~ 211950 (+)
G1330702 NA non-coding downstream 91084 241351 ~ 241896 (+)
G1330556 NA other upstream 96245 33661 ~ 36037 (+)
G1330676 NA other downstream 37450 187717 ~ 190795 (+)
G1330718 NA other downstream 169606 317523 ~ 328224 (+)
G1330834 NA other downstream 189809 340076 ~ 341076 (+)
G1331652 NA other downstream 1288520 1438787 ~ 1439125 (+)

Expression


Co-expression Network