XLOC_032296 (BX942846.1)


Basic Information

Item Value
gene id XLOC_032296
gene name BX942846.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 45114613 ~ 45328910 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063054
ATCGACTCGAGCATGCAGGCAGTTCATTCAAGTAGCTGTGTAGATCTGGACAAAATACAACGTGGCTTAAAATTTCCTGTGTGAAGCAGGGGAGGGGTTTGGTTCAGTTAAGAATAGCCTACATGCGCTTTGAGAGGAGACAGGCAACAGTTCGGACAGCAGACCTCACTGTGTCTCCAGCAGACCACATCGCTCCCCACTGTCTCCGTCCAGAGCGTTTACTGGAACCAGCTTCATTTTAAAGCCAACAAAGCTGactttacataggaaaaacacGGCTCTCTCCTCTTGCAGTTGAATGGAAATAAAAGGGATTCTGTGACCTTGGAAGATGAAGATGTTGTTGCCATGGGAACTCTTAATCCTGCTGTCACTCAAGAGCTGCCTAGCAGAGCGGATTGTTCGTCATGGACCAGTGTTCACTCAAGAGCCCAGCGACAGTGTTTTCCCTTTAACTGCTGAGGACAACAAGATATTCATTAACTGCAAAGCCAAGGGAAGCCCAGAGCCACATTACAGGTGGAAATTCAGCGGGAAAGACCTTGACATCGACATGGACTTCAACTACAGTCTGGTTGAGGGAAACCTTTTGATCAATAACCCTCAGGCAACTAAACACAGCGGTGTTTACCAGTGTATCGCCACTAATGCATTTGGAACCATCTTGAGCCGAGAAGCCAAAGTCGAGTTTGCATacCTGCAGAATTTCAGCATCAGGGCCAGAAGTCCAGTGTCAGTGAGGGAAGGACAGTCTGTTGTGCTGCTGTGTGGTCCGCCGGCCCACTTCGGAGAAATCAGATATTCCTGGATATTTAATGGCCGTCCGAGTGTCGCTGTTGGGGACAATCGGCGCTTTGTGTCCCAGCGGACTGGAAACCTCTACATCGCCAAGGTGGAGACGTCAGATGTGGGGAACTACACGTGTGTAGTGAGAAACGTGATGACCAACTCCAGCGTCTTCAGCTCGCCCACTCCAGTGGTGCTGCGGCGGGACGGTGTGATGGGAGAATACGAGCCAAAGATTGAAGTCCAGTTCGAAAAAATGCTCCATGTGGCCAAAGGATCGTCGGTCCGGCTGGAGTGTTTCGCTTTAGGAAATCCAGTGCCTTCTATTTCGTGGAAGAGAGCGGATGGAAACCCTTTCCCCGGGAAAATGAAGATAAATCACTCAAATGGGGTCCTAGAGATCCCATATTTCCGTCCTGAGGATTCTGGACTTTATGAATGTGTGGCTGAAAACTCGAAAGGACGCAGTATTGCGAAAGGACGGCTTGTATTTCAAAATGTGGAGCACCTGCAGTGGTCGCAGACTCTATATGATGCAAACATGGCCATTGAGTCGGATCTGCACTGGGAGTGTAAAGCCAATGGAAAACCTCAGCCCATTTACAGATGGATCAAGAACGGACAGCCTTTGGTCTCTCAGGTGATAATATACATAAACTGACAGAATAACTTTGTTCATCACATTTAACCAGGGTGCAAATTACAGCAGGGTTTGGGGGGGATCaattaacgcttgatcccccctgaaggacatcaaaacaagatgtatgggtgGGGTCTGATCTTTTatagttaagaaatagtttgctctaatctgtatcttaaataatattaataattaaattaatagataacttcaatatacatttgaccacccctataatggttcataccattgtgagtGCATGTTTGCGTCAAAAATATTATTCATTGGTTTGAAACTGGCAAATTTAGAGCACGGACAGACAGCGTACGTGTTCacaaaacattttgtttgtaGGTGTCTGTAAAACTAGATACACACGGaagttaaacattcattcattcattttcttgtcggcttagtccctttattaatccggggttgccacagcggaatgaaccgcctacttatccagcaagtttttacgcagcggatgcccttccagccgcaacccatgtctgggaaacatccgcacacacattcacacaatacactacggacaatttagcctacccaattcacctgtaccacatgtctttggactgtgggggaaacccacacaaaggcagggagaacatgcaaactccacacagaaacaccaactgaaccagcgacccagcgagcttcttgctgtgaggcgacagcactacctactgcgccactgcctcgccccaggaagttaacaataaaatgaaaatacttGCAGTCTTTGGTCATGGTCATCCATTAATAGGTGTAGGAAAGCAAACCTGtcactgtttatttaaaaccaCAAATGTCTATGAGAACCACTCAATATCCCCCAAAACACTGAAAGCATAATAACAAGTTTGataaataaattagatgtaattacaTTTGAACATATAAATTTGGTTCGCTGAGGCATATTACCCAACATAACCGAAAAACTTCACCCCCACTCCTCCCAACCCCCCTCC
>TCONS_00063055
GTGGCTTAAAATTTCCTGTGTGAAGCAGGGGAGGGGTTTGGTTCAGTTAAGAATAGCCTACATGCGCTTTGAGAGGAGACAGGCAACAGTTCGGACAGCAGACCTCACTGTGTCTCCAGCAGACCACATCGCTCCCCACTGTCTCCGTCCAGAGCGTTTACTGGAACCAGCTTCATTTTAAAGCCAACAAAGCTGactttacataggaaaaacacGGCTCTCTCCTCTTGCAGTTGAATGGAAATAAAAGGGATTCTGTGACCTTGGAAGATGAAGATGTTGTTGCCATGGGAACTCTTAATCCTGCTGTCACTCAAGAGCTGCCTAGCAGAGCGGATTGTTCGTCATGGACCAGTGTTCACTCAAGAGCCCAGCGACAGTGTTTTCCCTTTAACTGCTGAGGACAACAAGATATTCATTAACTGCAAAGCCAAGGGAAGCCCAGAGCCACATTACAGGTGGAAATTCAGCGGGAAAGACCTTGACATCGACATGGACTTCAACTACAGTCTGGTTGAGGGAAACCTTTTGATCAATAACCCTCAGGCAACTAAACACAGCGGTGTTTACCAGTGTATCGCCACTAATGCATTTGGAACCATCTTGAGCCGAGAAGCCAAAGTCGAGTTTGCATacCTGCAGAATTTCAGCATCAGGGCCAGAAGTCCAGTGTCAGTGAGGGAAGGACAGTCTGTTGTGCTGCTGTGTGGTCCGCCGGCCCACTTCGGAGAAATCAGATATTCCTGGATATTTAATGGCCGTCCGAGTGTCGCTGTTGGGGACAATCGGCGCTTTGTGTCCCAGCGGACTGGAAACCTCTACATCGCCAAGGTGGAGACGTCAGATGTGGGGAACTACACGTGTGTAGTGAGAAACGTGATGACCAACTCCAGCGTCTTCAGCTCGCCCACTCCAGTGGTGCTGCGGCGGGACGGTGTGATGGGAGAATACGAGCCAAAGATTGAAGTCCAGTTCGAAAAAATGCTCCATGTGGCCAAAGGATCGTCGGTCCGGCTGGAGTGTTTCGCTTTAGGAAATCCAGTGCCTTCTATTTCGTGGAAGAGAGCGGATGGAAACCCTTTCCCCGGGAAAATGAAGATAAATCACTCAAATGGGGTCCTAGAGATCCCATATTTCCGTCCTGAGGATTCTGGACTTTATGAATGTGTGGCTGAAAACTCGAAAGGACGCAGTATTGCGAAAGGACGGCTTGTATTTCAAAATGTGGAGCACCTGCAGTGGTCGCAGACTCTATATGATGCAAACATGGCCATTGAGTCGGATCTGCACTGGGAGTGTAAAGCCAATGGAAAACCTCAGCCCATTTACAGATGGATCAAGAACGGACAGCCTTTGGTCTCTCAGGACAGAATTCGTGTTGATGGTGGCAGGTTGACCATCTCCAACATAAACCTGGTTGATTCGGGGATGTATCAGTGTTTGGCAGAGAATGATAATGGAGTGATTTATGCCAGCGCTGAGCTCAAAGTTGTGGGT
>TCONS_00063056
ATGGACTTCAACTACAGTCTGGTTGAGGGAAACCTTTTGATCAATAACCCTCAGGCAACTAAACACAGCGGTGTTTACCAGTGTATCGCCACTAATGCATTTGGAACCATCTTGAGCCGAGAAGCCAAAGTCGAGTTTGCATacCTGCAGAATTTCAGCATCAGGGCCAGAAGTCCAGTGTCAGTGAGGGAAGGACAGTCTGTTGTGCTGCTGTGTGGTCCGCCGGCCCACTTCGGAGAAATCAGATATTCCTGGATATTTAATGGCCGTCCGAGTGTCGCTGTTGGGGACAATCGGCGCTTTGTGTCCCAGCGGACTGGAAACCTCTACATCGCCAAGGTGGAGACGTCAGATGTGGGGAACTACACGTGTGTAGTGAGAAACGTGATGACCAACTCCAGCGTCTTCAGCTCGCCCACTCCAGTGGTGCTGCGGCGGGACGGTGTGATGGGAGAATACGAGCCAAAGATTGAAGTCCAGTTCGAAAAAATGCTCCATGTGGCCAAAGGATCGTCGGTCCGGCTGGAGTGTTTCGCTTTAGGAAATCCAGTGCCTTCTATTTCGTGGAAGAGAGCGGATGGAAACCCTTTCCCCGGGAAAATGAAGATAAATCACTCAAATGGGGTCCTAGAGATCCCATATTTCCGTCCTGAGGATTCTGGACTTTATGAATGTGTGGCTGAAAACTCGAAAGGACGCAGTATTGCGAAAGGACGGCTTGTATTTCAAAATGTGGAGCACCTGCAGTGGTCGCAGACTCTATATGATGCAAACATGGCCATTGAGTCGGATCTGCACTGGGAGTGTAAAGCCAATGGAAAACCTCAGCCCATTTACAGATGGATCAAGAACGGACAGCCTTTGGTCTCTCAGGACAGAATTCGTGTTGATGGTGGCAGGTTGACCATCTCCAACATAAACCTGGTTGATTCGGGGATGTATCAGTGTTTGGCAGAGAATGATAATGGAGTGATTTATGCCAGCGCTGAGCTCAAAGTTGTGGGTAAgcacttttattttgacattttaaatattcaataacaATTGTATTAACCTTACTCAAAAAGCTGACAATGGTGATGTCACAATAACTTTTTAAACAGCCCTTCAATTGCCATAAATGTGTTAGTCAAGTCGAgaaaaataatgtttcattatttattttgtgtcatCAAACAAGTCAGCCACAGTTTAAAAGCTTCATGTTTCAGCAACA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104277

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063054 False 2430 mRNA 0.46 9 45114613 45327481
TCONS_00063055 False 1497 mRNA 0.49 10 45114674 45328699
TCONS_00063056 True 1216 mRNA 0.46 7 45300746 45328910

Neighbor

gene id symbol gene type direction distance location
XLOC_032295 NA coding upstream 31324 44987628 ~ 45083289 (+)
XLOC_032294 chl1b coding upstream 137185 44812444 ~ 44977428 (+)
XLOC_032292 NA coding upstream 309025 44400642 ~ 44805588 (+)
XLOC_032293 NA coding upstream 317054 44721192 ~ 44797559 (+)
XLOC_032291 ppp4r2b coding upstream 905223 44197099 ~ 44209390 (+)
XLOC_032297 LO017951.1 coding downstream 17898 45346808 ~ 45376758 (+)
XLOC_032298 CABZ01009812.1 coding downstream 26499 45355409 ~ 45355525 (+)
XLOC_032299 cntn4 coding downstream 165317 45494227 ~ 45838103 (+)
XLOC_032300 LO018004.1 coding downstream 276370 45605280 ~ 45605396 (+)
XLOC_032301 h6pd coding downstream 590071 45918981 ~ 45929465 (+)
XLOC_032289 BX119974.1 non-coding upstream 981531 44132968 ~ 44133082 (+)
XLOC_032287 NA non-coding upstream 1512741 43597596 ~ 43601872 (+)
XLOC_032304 BX663614.1 non-coding downstream 696936 46025846 ~ 46025963 (+)
XLOC_032306 NA non-coding downstream 980826 46309736 ~ 46320528 (+)
XLOC_032314 CU639408.1 non-coding downstream 1420596 46749506 ~ 46749624 (+)

Expression


Co-expression Network