nid1a (LOC106578745)


Basic Information

Item Value
gene id nid1a
gene name LOC106578745
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 1158437 ~ 1239914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945913.1
TTAATCTGCTGTGGGGCTAGTTCAGTGCAACAGTCTCTCTGCATCTGCGCTACCCTCTGACTGCTCCACTCCGCGGTCTGTGAAGCACTAATCATGGGACAGCAGGGGCAAGGATGGCTGTTCTACGCGACCCTTCTTCTGGGGTGGGCAGTGTCTGTGCATGGTCTGACCCGGGCAGAGTTCTTCCCGTTCGGCAAAACCACTGGAGACCACGTTCTGGAACAGGGGAATGACCTCTCGCAACAACTAGCGCTGGATAAACCCGTTTTATTCTACGATGGAAAGTTCGATAACATCTTTATCAACACCAATGGGTTCGTTGCCATGGCACAGCCCAGTGCTGAGTCCACATACCTTGGTAAGATGCCCGCCGGGTTCGGCATGATCGCGGCCCTGCACGGCGACCTGGATACTGGTGACGGCGTGGGTAAGGTGTACTACCGTCAGGATGCCAGCCCAGCCACCCTGCGGCAGGCTGCAGAGCAGATTAACAGGGCTTTTCCAGAGGAcgatgagGTGGAGCCGGAACACGCGGTGGTCGTCACCTGGGTAGATGTGGCTTCCAGGCAACACCATGACCACAGCAGAGGAGACGGACTGGAGAAACAGAGGAATAGCTTCCAGCTGGTGATAGCGTCAGCTGAGACGACCTCCTATGCCATCCTGCTTTACCCCAGGAAGGGGATGCAGTTTGCCTCCACAGCTGTAGGAGGCAGTAGTCAGGCCATGCAGGCGGGCTTCAGTAAAGGGCTGGTCAACTACCTGGTGTTCAGCACCCGACAGGGACCGTACTACCGCATCACCACCGAGAGGGAGACCTCTGTCAGGGCGCTAGCAGAGGAGACCAACTCAGGTAAGCGAGGTGTGTGGGTGTACGAGATTGGGACTTCCCCTTACTTCACCAGTGTGGCCCCAGGAGAGGTGACAGACCTGCCCCCAGACACAGGCCTGGAGTCAAGGGTCTCGGAGGAGGCTACCTCAAAGAGGTATCCGGGAGGAGGGCAACAAGTGACGTATTCTCCCTACGaaccggaggaggaggtgtaTCGCAAGGAGCAGCCTCACCAGGGACCTCACCACGGGGGCCAGTTCACAGTCCACACGGTCCAGTACCAGCCTCAGGTGGTGGTAGTAGATGATGGAGACATCAACGTGGATGTGTTCTCCTACAACTCTGAGACATGTGCCAACAACAGAAATAAGTGTTCCACCTTCGCCGACTGTAAAGATTACGCCAGCGGTTACTGTTGTCACTGCCGGCCCGGCTACTATGGCAACGGAATACAGTGTGTGTCAGAGGGTAAGCCCCAGAGGATGAACGGCAAGGTGAATGGCAGGGTGTACGTGGGCAACTCTCCGTCTCCCGTCGAGTTCAACAGCAACGACCTGCACTCGTACGTGGTAGCCAATGACGGGCGAGCATACGTGGCCATCAGCACCATCCCTGCCAGGCTAGGCCCCTCCCTCCAGCCCCTGTCAGCCCTGGGAGGAGTCATCGGATGGGCCTTTGCCCTGGAGCAGCCTGGATACAAGAACGGATTCAGCATCATCGGTGGTGAGTTTACGTGTCAGGCTGAGGTGACCTTCCTACCAGCCCAGGAGAAGCTGACCATCAAACAGGTGTTCAGTGGAATAGATGAGCATGATCACCTGGTGGTCAGTACCACTCTGGAGGGACGTGTCCCCGAAGTTCTCAGAGGATCCACTGTCCAGATAGAACCCTACTCTGAGATCTATCAGTACAGCTCCAACCtgaTCACGTCTTCCTCTACAAGGGACTACACTGTGAGTCTGGATGATGGCTCTGCTGAGACCAGGACTTACCAGTGGAGACAGACCATCACCTTCCAGAGCTGTCCAAATGACGAGGCTGCAAGGGCCGTGCTGCCCACACAGATGCTGAGTGTGGACCAGGTGTTTGTGATGTACGACTCCAACAACGAGCTGATCCGATACGCCATGAGCAACAAAATCGGTGATGTCAACGGAGGCCAGCAGAAAGAGGAAAATTCCTGTTTCACTGGGAGACACGGCTGTGACACCAACGCTGTCTGTAGACCCGAACAGGGAACACAGTTCACCTGCCAGTGtgctgctggcttcactggagaCGGACGCTCTTGTTACGATATTGATGAGTGTAGAGAGATCCCTCTGGCCTGTGGAGAACACTCAGTCTGCAACAACCAGCCCGGAACCTTCCGCTGTGAGTGTAATGATGGATACCAGTTCGCCAGCGACGGGCACACCTGCATAGGAGTGGACCGTCCAGTAGACCACTGCGCGGCCGGCAGCCATGACTGTGACATCACGGAGCGCGCTCACTGCAGCTACAGTGGAGGATCCTCTTATATCTGCTCCTGTTTGCCTGGGTTTCAGGGACACGGACGTGTCTGCCAAGATATTGATGAGTGCCAGTCTGCCAGGTGCCACCAGAAGGCTGTGTGTTATAACACCCAGGGGTCCTTTACCTGCCAGTGCAGGCCAGGTTACTATGGTGACGGCTTCTACTGCTCCTCAGAGCATACGAAGTCGCAGTGTGAGACCCACAGGGACCGTCTCCTAGGCTCTACAGAGTACGGGCCCCAGCCGGTGCCTGGTCAGTACGTGCCTACCTGTGACAGCCAGGGAGCCTACGAGGCCTCCCAGTGCCACGGTTCCATCGGACATTGTTGGTGTGTTGACCGTAACGGACTGGAGATCCCAGGAACACGCACTGGGCCCGGCAGAGGCAGACCACTGTGTATAGAACAAGGACCAACAGTTCGTCCCGCAGTAGGCCCTACTCCCAGGCCAGATGTTTACCCTCTACCCCCCGGCACACACCTGCTCTTTGCTCAGAGTGGACGCATCGAGTTTGTCCCATTGGAGGGCTACAACATGAAGAAGACAGAGGCAAAGACTGTCCTGCATCTACCGGAGAAGGTGATCATCGGGGTGGCCTATGACTGTGTGGAGAAGATGGTGTACTGGACAGACATCACATCCCCCTCTATCAGCAAGGCCAACCTGCAGGGAGGAGGAGCCATCCCTGTCATCAGATCAGATCTGGAGAGTCCAGAAGGGATCGCTATAGACCATCTGGGTCGTACCCTGTTCTGGACAGATTCTATGAAGGACCGCATCGAGGTGGCCTCTCTGGATGGGACCAAGCGACGTGTCCTCATCGACACAAACTTGGTCAACCCCCGAGCCATCATCGTTGACCCTGTCAATGGCAACATGTACTGGGCAGACTGGAACCGTGATGCTCCTAAAATCGAGACTTCTGCCATGGATGGGACCAACAGGAGAGTTCTGGTGAAGGATGACCTGGGGCTACCTAACGGACTCACCTACGACCCGCAGAGCTCTCAGCTGTGCTGGGCCGATGCAGGAACCCAGATGATGAAGTTAATAAACCCTGCCCAGGGTtagtacagtaccttcaga
>XM_036945912.1
ATCTGCTGTGGGGCTAGTTCAGTGCAACAGTCTCTCTGCATCTGCGCTACCCTCTGACTGCTCCACTCCGCGGTCTGTGAAGCACTAATCATGGGACAGCAGGGGCAAGGATGGCTGTTCTACGCGACCCTTCTTCTGGGGTGGGCAGTGTCTGTGCATGGTCTGACCCGGGCAGAGTTCTTCCCGTTCGGCAAAACCACTGGAGACCACGTTCTGGAACAGGGGAATGACCTCTCGCAACAACTAGCGCTGGATAAACCCGTTTTATTCTACGATGGAAAGTTCGATAACATCTTTATCAACACCAATGGGTTCGTTGCCATGGCACAGCCCAGTGCTGAGTCCACATACCTTGGTAAGATGCCCGCCGGGTTCGGCATGATCGCGGCCCTGCACGGCGACCTGGATACTGGTGACGGCGTGGGTAAGGTGTACTACCGTCAGGATGCCAGCCCAGCCACCCTGCGGCAGGCTGCAGAGCAGATTAACAGGGCTTTTCCAGAGGAcgatgagGTGGAGCCGGAACACGCGGTGGTCGTCACCTGGGTAGATGTGGCTTCCAGGCAACACCATGACCACAGCAGAGGAGACGGACTGGAGAAACAGAGGAATAGCTTCCAGCTGGTGATAGCGTCAGCTGAGACGACCTCCTATGCCATCCTGCTTTACCCCAGGAAGGGGATGCAGTTTGCCTCCACAGCTGTAGGAGGCAGTAGTCAGGCCATGCAGGCGGGCTTCAGTAAAGGGCTGGTCAACTACCTGGTGTTCAGCACCCGACAGGGACCGTACTACCGCATCACCACCGAGAGGGAGACCTCTGTCAGGGCGCTAGCAGAGGAGACCAACTCAGGTAAGCGAGGTGTGTGGGTGTACGAGATTGGGACTTCCCCTTACTTCACCAGTGTGGCCCCAGGAGAGGTGACAGACCTGCCCCCAGACACAGGCCTGGAGTCAAGGGTCTCGGAGGAGGCTACCTCAAAGAGGTATCCGGGAGGAGGGCAACAAGTGACGTATTCTCCCTACGaaccggaggaggaggtgtaTCGCAAGGAGCAGCCTCACCAGGGACCTCACCACGGGGGCCAGTTCACAGTCCACACGGTCCAGTACCAGCCTCAGGTGGTGGTAGTAGATGATGGAGACATCAACGTGGATGTGTTCTCCTACAACTCTGAGACATGTGCCAACAACAGAAATAAGTGTTCCACCTTCGCCGACTGTAAAGATTACGCCAGCGGTTACTGTTGTCACTGCCGGCCCGGCTACTATGGCAACGGAATACAGTGTGTGTCAGAGGGTAAGCCCCAGAGGATGAACGGCAAGGTGAATGGCAGGGTGTACGTGGGCAACTCTCCGTCTCCCGTCGAGTTCAACAGCAACGACCTGCACTCGTACGTGGTAGCCAATGACGGGCGAGCATACGTGGCCATCAGCACCATCCCTGCCAGGCTAGGCCCCTCCCTCCAGCCCCTGTCAGCCCTGGGAGGAGTCATCGGATGGGCCTTTGCCCTGGAGCAGCCTGGATACAAGAACGGATTCAGCATCATCGGTGGTGAGTTTACGTGTCAGGCTGAGGTGACCTTCCTACCAGCCCAGGAGAAGCTGACCATCAAACAGGTGTTCAGTGGAATAGATGAGCATGATCACCTGGTGGTCAGTACCACTCTGGAGGGACGTGTCCCCGAAGTTCTCAGAGGATCCACTGTCCAGATAGAACCCTACTCTGAGATCTATCAGTACAGCTCCAACCtgaTCACGTCTTCCTCTACAAGGGACTACACTGTGAGTCTGGATGATGGCTCTGCTGAGACCAGGACTTACCAGTGGAGACAGACCATCACCTTCCAGAGCTGTCCAAATGACGAGGCTGCAAGGGCCGTGCTGCCCACACAGATGCTGAGTGTGGACCAGGTGTTTGTGATGTACGACTCCAACAACGAGCTGATCCGATACGCCATGAGCAACAAAATCGGTGATGTCAACGGAGGCCAGCAGAAAGAGGAAAATTCCTGTTTCACTGGGAGACACGGCTGTGACACCAACGCTGTCTGTAGACCCGAACAGGGAACACAGTTCACCTGCCAGTGtgctgctggcttcactggagaCGGACGCTCTTGTTACGATATTGATGAGTGTAGAGAGATCCCTCTGGCCTGTGGAGAACACTCAGTCTGCAACAACCAGCCCGGAACCTTCCGCTGTGAGTGTAATGATGGATACCAGTTCGCCAGCGACGGGCACACCTGCATAGGAGTGGACCGTCCAGTAGACCACTGCGCGGCCGGCAGCCATGACTGTGACATCACGGAGCGCGCTCACTGCAGCTACAGTGGAGGATCCTCTTATATCTGCTCCTGTTTGCCTGGGTTTCAGGGACACGGACGTGTCTGCCAAGATATTGATGAGTGCCAGTCTGCCAGGTGCCACCAGAAGGCTGTGTGTTATAACACCCAGGGGTCCTTTACCTGCCAGTGCAGGCCAGGTTACTATGGTGACGGCTTCTACTGCTCCTCAGAGCATACGAAGTCGCAGTGTGAGACCCACAGGGACCGTCTCCTAGGCTCTACAGAGTACGGGCCCCAGCCGGTGCCTGGTCAGTACGTGCCTACCTGTGACAGCCAGGGAGCCTACGAGGCCTCCCAGTGCCACGGTTCCATCGGACATTGTTGGTGTGTTGACCGTAACGGACTGGAGATCCCAGGAACACGCACTGGGCCCGGCAGAGGCAGACCACTGTGTATAGAACAAGGACCAACAGTTCGTCCCGCAGTAGGCCCTACTCCCAGGCCAGATGTTTACCCTCTACCCCCCGGCACACACCTGCTCTTTGCTCAGAGTGGACGCATCGAGTTTGTCCCATTGGAGGGCTACAACATGAAGAAGACAGAGGCAAAGACTGTCCTGCATCTACCGGAGAAGGTGATCATCGGGGTGGCCTATGACTGTGTGGAGAAGATGGTGTACTGGACAGACATCACATCCCCCTCTATCAGCAAGGCCAACCTGCAGGGAGGAGGAGCCATCCCTGTCATCAGATCAGATCTGGAGAGTCCAGAAGGGATCGCTATAGACCATCTGGGTCGTACCCTGTTCTGGACAGATTCTATGAAGGACCGCATCGAGGTGGCCTCTCTGGATGGGACCAAGCGACGTGTCCTCATCGACACAAACTTGGTCAACCCCCGAGCCATCATCGTTGACCCTGTCAATGGCAACATGTACTGGGCAGACTGGAACCGTGATGCTCCTAAAATCGAGACTTCTGCCATGGATGGGACCAACAGGAGAGTTCTGGTGAAGGATGACCTGGGGCTACCTAACGGACTCACCTACGACCCGCAGAGCTCTCAGCTGTGCTGGGCCGATGCAGGAACCCACATGATTGAGTGTATGAACCCAGCGCAGGGAGACAGGAGGAAGGCCATGGGGGCGATCCAGTACCCATTTGGAATCACCTCCCATGGGAAGAACATCTACTACACTGACTGGAGGAGGGATGCAGTGATCATGGTGGATCGTCAAGCTGGGACGGAAACGGACGTGTTCCTGCCTCAGAAACAGACCAGGCTATACGGAATCACCACGGCATACGCTCAGTGCccctcagGTAAAAACTACTGTGCCGTGAACAACGGAGGATGCACACATCTATGTTTGGCCACACCCAGAGGTCGCTCCTGTCTGTGTCCCAACAATGCACTGGGCGTCAGCTGTGTGGAGAGCGAGGGGGGCAGGTtttgaggtggagagagaggggggcaggtaTTGAAGTGGAGAAGGAGGGGGGCAGGTATTGAAGTGGAGAAGAGGGGGCCAGGTTTTGAAGTGGAGAAGAGGGGGCCAGGTTTtgaggtggagaaggaggggggTAGGTATTGAGGTGGAGAATGAGGGGGGTAGGTATtgaggtggagaaggaggggggTAGGTATTGAGGTGATGAGACAGACAGGGCACTCAGAAATAATGGCTACATCATGTGTATTTGATCTTATCTGTAACTCTGCATTTTTGTAAAAGGACCGtaaagaaagcatttcactgttagtctacacctgttagtctaccaagcatgtgacaagtGGAATTGGACTTGATTTGATTCCAGGCTGACTACATTGTAGACGCCTGCCAGATCTCACAACACCTGGATGTCTGTTTAATTAACATACAGTTTATCTGCTAAGCACATCATTTGATatatcaaccaaccaaccaatcaatcaataacATTGACTTTATAAAGCCCTTTATATACCAGCAATCGGATGTAATATAACAAACTGGTGTTAGGCCTCGCAGTCCGTGATGTAGCATGCAACCGTTGGTTGATACAATGCAACAGAGAATACGATGTAGTCGGGCCGAGAACGTACCCACAGATAGATAGCCTAATGTCTTCTCTCTGGTGCCCTGGGGAGTTAGATGCTGCTAGTCTCTAACGTAGAAATATAAACCATAGAACAGGTCTCACCGTTCATGTcaatgatgtcataatggggtagGCTGGCAGCCTTTACGAGTGTAGCCAAAAGATTATCAGTCAAATCACCAGGGTTAGAGCCCTTTCTATAGATGATATTTATATCTAGACTGTAGCTGTTCTGAACATCGCCACTGAAACAATTTGATATTTTTATCCCAGCCAGTTTTTTTTATTAATCCTGTTATAAAgtcacatacatttttatttagaatTGTAAATAAATACCTTTGAAGTATAAATACATTGTTCTATGGAGCTGGTTAAGAGTATTTcaagaaaaatgtttttttttgttgtgtgtgttagtATTATTCTATCAAGGCAACTGTTGGTCAAAATAAATCTTAGCTTGTTACGACTCCCCTCCTTGCTCTGTGAAAAGTGTGGCATCAGATCACCCCCACatccccaaaatgtattttttgtgtgtgttagtatTCTATCAAGGCAACTGTTGGTCAAAATAAATCTTAGCTTGTTACGACTCCCCTCCTTGCTCTGTGAAATGTGTGGCATCAGATCACCCCCACATCCCCCATTTAAACACCATACTGAAGTATGTTACAGAGTCGACTGTATTCACTGCTGGGGTGGCAGACAGGAGTTTACTGTACATCCTGTGCAGCTATCCAAtaaaaatatgttgttgttttttta

Function

NR:

description
nidogen-1

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06826 NID; nidogen (entactin)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945913.1 False 3432 mRNA 0.56 20 1158437 1226182
XM_036945912.1 True 5146 mRNA 0.52 22 1158440 1239914

Neighbor

gene id symbol gene type direction distance location
egln1a NA coding upstream 71062 1041938 ~ 1087375 (+)
LOC110517286 sipa1l2 coding upstream 382619 458272 ~ 775818 (+)
LOC110491220 NA coding upstream 732863 330164 ~ 425574 (+)
LOC110491242 LOC106578741 coding upstream 1008170 132282 ~ 150267 (+)
lyst LOC106578744 coding downstream 8100 1248014 ~ 1490396 (+)
LOC118939493 NA coding downstream 184392 1424306 ~ 1425318 (+)
LOC110491205 gng4 coding downstream 261530 1501444 ~ 1516250 (+)
LOC110491206 NA coding downstream 282342 1522256 ~ 1525409 (+)
b3galnt2 b3galnt2 coding downstream 289184 1529098 ~ 1556109 (+)
G1331571 NA non-coding upstream 4795 1153316 ~ 1153642 (+)
G1331566 NA non-coding upstream 8108 1150023 ~ 1150329 (+)
G1331563 NA non-coding upstream 9196 1148703 ~ 1149241 (+)
G1331473 NA non-coding upstream 24511 1133559 ~ 1133926 (+)
G1331472 NA non-coding upstream 25375 1132763 ~ 1133062 (+)
G1331622 NA non-coding downstream 85570 1325484 ~ 1325791 (+)
G1331623 NA non-coding downstream 86423 1326337 ~ 1327156 (+)
G1331627 NA non-coding downstream 96512 1336426 ~ 1338184 (+)
G1331633 NA non-coding downstream 120486 1360400 ~ 1360688 (+)
G1331648 NA non-coding downstream 173075 1412989 ~ 1413547 (+)
G1330834 NA other upstream 817361 340076 ~ 341076 (+)
G1330718 NA other upstream 830213 317523 ~ 328224 (+)
G1330676 NA other upstream 967642 187717 ~ 190795 (+)
G1330556 NA other upstream 1122400 33661 ~ 36037 (+)
G1331652 NA other downstream 198873 1438787 ~ 1439125 (+)
G1332260 NA other downstream 689410 1929324 ~ 1930473 (+)
G1332261 NA other downstream 690840 1930754 ~ 1931132 (+)
heatr5b LOC106578753 other downstream 1055942 2295839 ~ 2571759 (+)
LOC110491239 LOC106578780 other downstream 1691306 2931169 ~ 2939940 (+)

Expression


Co-expression Network