LOC118939494


Basic Information

Item Value
gene id LOC118939494
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 1556467 ~ 1558333 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945924.1
TTGGTGACTGGTGACTGGTGATTGGTGACTGGTGACTGGTGACTGGTGATTGGTGACTGGTGACTGGTGACTGGTGATTGGTGACTGGTGACTGGTGATTTTGGGGCTGGATCCAAATagtaccctatttcctatatatttTTACCAGAGTTGTATGGGGCCTAGTAgtgtacaatatagggaatagggtgccatttggcttcTTTGCCTTGCTTAAGGGCTGATGGactgatttttcacctagtcggctcggggattcgaaccagcggcCCTTGGGTTTCACCGTGTGTATTAGCCTCTTCTCTCCACCAGCCAACAGAGTAAACCCCATGCCGAGAGTCTCTCAGATGATGGGGGTAGTCCGTATTGTCAGGCTACCACAACCCCACCAGCACACCATTGGGGTCACACTGCCTGACTTCCAGGACACCATTGGGGTCACACTGCCTGACTTCCAGGACACCATCGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACGCTGCCTGACTTCCAGGACGCCATTGGGGTCACGCTGCCTGACTTCCAGGACACCATCGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACGCTGCCTGACTTCCAGGACGCCATTGGGGTCACACTGCCTGACTTCCAGGACACCATTGGGGTCACACTGCcagacacctacaacaccagttGCCGCAGGAagggccaagaagatcatcaaggacctcagccacctgagctAACGCCGCTTCCATCACTCTGACGCCAGCAGTACAGGAACATCATGGCTAAAACTAACAGACTGgtcaatagcttctacccccagaccatcagGTTGCTGAATAGATACtactagcttctacccccagaccaccaGGTTGCTGAATAGATACtactagcttctacccccagaccatcaggttGCTGAATAGACACtactagcttctacccccagaccatcaggttGCTGAATAGATACtactagcttctacccccagaccatcaggttGCTGAATAGATACtactagcttctacccccagaccatcaggttGCTGAATAGATACtactagcttctacccccagaccaccaGGTTGCTGAATAGATACtactagcttctacccccagaccatcaggttGCTGAATAGACACtactagcttctacccccagaccatcaggttGCTGAATAGATACtactagcttctacccccagaccatcaggttGCTGAATAGATACtactagcttctacccccagaccatcaggttGCTGAATAGATACtactagcttctacccccagaccaccaGGTTGCTGAATAGATACtactagcttctacccccagaccatcaggtcgg
>XM_036945923.1
TTGGTGACTGGTGACTGGTGATTGGTGACTGGTGACTGGTGACTGGTGATTGGTGACTGGTGACTGGTGACTGGTGATTGGTGACTGGTGACTGGTGATTTTGGGGCTGGATCCAAATagtaccctatttcctatatatttTTACCAGAGTTGTATGGGGCCTAGTAgtgtacaatatagggaatagggtgccatttggcttcTTTGCCTTGCTTAAGGGCTGATGGactgatttttcacctagtcggctcggggattcgaaccagcggcCCTTGGGTTTCACCGTGTGTATTAGCCTCTTCTCTCCACCAGCCAACAGAGTAAACCCCATGCCGAGAGTCTCTCAGATGATGGGGGTAGTCCGTATTGTCAGGCTACCACAACCCCACCAGCACACCATTGGGGTCACACTGCCTGACTTCCAGGACACCATTGGGGTCACACTGCCTGACTTCCAGGACACCATCGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACGCTGCCTGACTTCCAGGACGCCATTGGGGTCACGCTGCCTGACTTCCAGGACACCATCGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACGCTGCCTGACTTCCAGGACGCCATTGGGGTCACACTGCCTGACTTCCAGGACACCATTGGGGTCACACTGCcagacacctacaacaccagttGCCGCAGGAagggccaagaagatcatcaaggacctcagccacctgagctAACGCCGCTTCCATCACTCTGACGCCAGCAGTACAGGAACATCATGGCTAAAACTAACAGACTGgtcaatagcttctacccccagaccatcaggttGCTGAATAGACACtactagcttctacccccagaccaccaGGTTGCTGAATAGACACtactagcttctacccccagaccaccaGGTTGCTGAATAGATACtactagcttctacccccagaccaccaGGTTGCTGAATAGATACtactagcttctacccccagaccatcaggttGCTGAATAGACACtactagcttctacccccagaccatcaggttGCTGAATAGATACtactagcttctacccccagaccatcaggttGCTGAATAGATACtactagcttctacccccagaccatcaggttGCTGAATAGATACtactagcttctacccccagaccaccaGGTTGCTGAATAGATACtactagcttctacccccagaccatcaggtcggccaccaattgtgcaagttctcccacttaaaaagatgagaggcctgtaattttcatc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106609568 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945924.1 False 1725 mRNA 0.54 2 1556467 1558277
XM_036945923.1 True 1652 mRNA 0.54 2 1556467 1558333

Neighbor

gene id symbol gene type direction distance location
b3galnt2 b3galnt2 coding upstream 361 1529098 ~ 1556109 (+)
LOC110491206 NA coding upstream 31058 1522256 ~ 1525409 (+)
LOC110491205 gng4 coding upstream 40217 1501444 ~ 1516250 (+)
lyst LOC106578744 coding upstream 66071 1248014 ~ 1490396 (+)
LOC118939493 NA coding upstream 131149 1424306 ~ 1425318 (+)
arid4b arid4b coding downstream 53411 1611744 ~ 1825933 (+)
LOC118939496 NA coding downstream 212916 1771249 ~ 1774594 (+)
tomm20a tomm20 coding downstream 273695 1832028 ~ 1838160 (+)
LOC110491199 i2b2b coding downstream 420507 1978840 ~ 1982341 (+)
heatr5b LOC106578753 coding downstream 737506 2295839 ~ 2571759 (+)
G1331690 NA non-coding upstream 29756 1526486 ~ 1526711 (+)
G1331688 NA non-coding upstream 42931 1513170 ~ 1513536 (+)
G1331677 NA non-coding upstream 52659 1503578 ~ 1503808 (+)
G1331676 NA non-coding upstream 52918 1503341 ~ 1503549 (+)
G1331714 NA non-coding downstream 15038 1573371 ~ 1573968 (+)
G1331734 NA non-coding downstream 41622 1599955 ~ 1600307 (+)
G1331741 NA non-coding downstream 48616 1606949 ~ 1609052 (+)
G1331757 NA non-coding downstream 87504 1645837 ~ 1732281 (+)
G1331759 NA non-coding downstream 94128 1652461 ~ 1653351 (+)
G1331652 NA other upstream 117342 1438787 ~ 1439125 (+)
LOC110491220 NA other upstream 1133193 330164 ~ 425574 (+)
G1330834 NA other upstream 1215391 340076 ~ 341076 (+)
G1330718 NA other upstream 1228243 317523 ~ 328224 (+)
G1330676 NA other upstream 1365672 187717 ~ 190795 (+)
G1332260 NA other downstream 370991 1929324 ~ 1930473 (+)
G1332261 NA other downstream 372421 1930754 ~ 1931132 (+)
LOC110491239 LOC106578780 other downstream 1372887 2931169 ~ 2939940 (+)
G1332701 NA other downstream 1414475 2972808 ~ 2973800 (+)

Expression


Co-expression Network