Gene
RNA
| Item | Value |
|---|---|
| gene id | gpatch11 |
| gene name | gpatch11 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 2289460 ~ 2294903 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| gpatch11 | Predicted to enable nucleic acid binding activity. Predicted to be located in chromosome, centromeric region. Predicted to be active in kinetochore. Orthologous to human GPATCH11 (G-patch domain containing 11). |
| description |
|---|
| G patch domain-containing protein 11 |
| id | name | namespace |
|---|---|---|
| GO:0003676 | nucleic acid binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036945946.1 | True | 1482 | mRNA | 0.43 | 8 | 2289460 | 2294903 |
2,283,000
2,284,000
2,285,000
2,286,000
2,287,000
2,288,000
2,289,000
2,290,000
2,291,000
2,292,000
2,293,000
2,294,000
2,295,000
2,296,000
2,297,000
2,298,000
NC_048580.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| eif2ak2 | pkr | coding | downstream | 884 | 2252487 ~ 2288576 (-) |
| pkz | pkz | coding | downstream | 53521 | 2198705 ~ 2235939 (-) |
| LOC118939485 | NA | coding | downstream | 138657 | 2134076 ~ 2150803 (-) |
| LOC118939484 | NA | coding | downstream | 328246 | 1957128 ~ 1961214 (-) |
| ggps1 | ggps1 | coding | downstream | 677879 | 1576693 ~ 1611581 (-) |
| LOC118939497 | NA | coding | upstream | 320885 | 2615788 ~ 2616529 (-) |
| vit | vit | coding | upstream | 336908 | 2631811 ~ 2738891 (-) |
| LOC110492799 | LOC106591794 | coding | upstream | 452871 | 2747774 ~ 2781477 (-) |
| LOC110491225 | LOC106578778 | coding | upstream | 587909 | 2881255 ~ 2930676 (-) |
| mkks | mkks | coding | upstream | 759257 | 3054160 ~ 3064816 (-) |
| G1332918 | NA | non-coding | downstream | 6173 | 2282504 ~ 2283287 (-) |
| G1332882 | NA | non-coding | downstream | 41392 | 2247760 ~ 2248068 (-) |
| G1332881 | NA | non-coding | downstream | 43123 | 2245635 ~ 2246337 (-) |
| G1332876 | NA | non-coding | downstream | 47874 | 2239847 ~ 2241586 (-) |
| G1332912 | NA | non-coding | downstream | 54200 | 2234264 ~ 2235260 (-) |
| G1332927 | NA | non-coding | upstream | 18441 | 2313344 ~ 2314055 (-) |
| G1332929 | NA | non-coding | upstream | 21013 | 2315916 ~ 2317359 (-) |
| G1332935 | NA | non-coding | upstream | 43778 | 2338681 ~ 2346735 (-) |
| G1332967 | NA | non-coding | upstream | 269686 | 2564589 ~ 2566769 (-) |
| G1332965 | LOC106578649 | non-coding | upstream | 274177 | 2569080 ~ 2569453 (-) |
| G1332878 | NA | other | downstream | 61057 | 2221111 ~ 2228403 (-) |
| G1332294 | i2b2b | other | downstream | 307134 | 1980673 ~ 1982326 (-) |
| G1332218 | NA | other | downstream | 395291 | 1893718 ~ 1894169 (-) |
| G1332206 | NA | other | downstream | 424366 | 1864566 ~ 1865094 (-) |
| G1332165 | LOC100194703 | other | downstream | 479928 | 1809023 ~ 1809532 (-) |
| G1333132 | NA | other | upstream | 732421 | 3027324 ~ 3029273 (-) |
| G1333345 | NA | other | upstream | 1151927 | 3446830 ~ 3522295 (-) |
| G1334648 | NA | other | upstream | 1933281 | 4228184 ~ 4230047 (-) |
| G1334697 | NA | other | upstream | 2043233 | 4338136 ~ 4338659 (-) |
| G1334939 | NA | other | upstream | 2590385 | 4885288 ~ 4886398 (-) |
