Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110492799 |
| gene name | LOC106591794 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 2747774 ~ 2781477 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| visual pigment-like receptor peropsin |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036945863.1 | True | 1630 | mRNA | 0.50 | 6 | 2747774 | 2781477 |
2,748,000
2,752,000
2,756,000
2,760,000
2,764,000
2,768,000
2,772,000
2,776,000
2,780,000
2,784,000
2,788,000
2,792,000
2,796,000
2,800,000
2,804,000
2,808,000
2,812,000
2,816,000
2,820,000
NC_048580.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| vit | vit | coding | downstream | 8883 | 2631811 ~ 2738891 (-) |
| LOC118939497 | NA | coding | downstream | 131245 | 2615788 ~ 2616529 (-) |
| gpatch11 | gpatch11 | coding | downstream | 452871 | 2289460 ~ 2294903 (-) |
| eif2ak2 | pkr | coding | downstream | 459198 | 2252487 ~ 2288576 (-) |
| pkz | pkz | coding | downstream | 511835 | 2198705 ~ 2235939 (-) |
| LOC110491225 | LOC106578778 | coding | upstream | 101335 | 2881255 ~ 2930676 (-) |
| mkks | mkks | coding | upstream | 272683 | 3054160 ~ 3064816 (-) |
| jag1b | jag1 | coding | upstream | 433189 | 3214666 ~ 3316900 (-) |
| LOC118939499 | NA | coding | upstream | 1635394 | 4416871 ~ 4417728 (-) |
| ism1 | ism1 | coding | upstream | 1636833 | 4418310 ~ 4463169 (-) |
| G1333011 | NA | non-coding | downstream | 43289 | 2702376 ~ 2704485 (-) |
| G1332976 | NA | non-coding | downstream | 130969 | 2614079 ~ 2616805 (-) |
| G1332980 | NA | non-coding | downstream | 150308 | 2596910 ~ 2597466 (-) |
| G1332978 | NA | non-coding | downstream | 152265 | 2594981 ~ 2595509 (-) |
| G1332970 | NA | non-coding | downstream | 168903 | 2577684 ~ 2578871 (-) |
| G1333052 | NA | non-coding | upstream | 12559 | 2794036 ~ 2795941 (-) |
| G1333055 | NA | non-coding | upstream | 20267 | 2801744 ~ 2802134 (-) |
| G1333058 | NA | non-coding | upstream | 28260 | 2809737 ~ 2809990 (-) |
| G1333068 | NA | non-coding | upstream | 52370 | 2833847 ~ 2834164 (-) |
| G1333069 | NA | non-coding | upstream | 52740 | 2834217 ~ 2834447 (-) |
| G1332878 | NA | other | downstream | 519371 | 2221111 ~ 2228403 (-) |
| G1332294 | i2b2b | other | downstream | 765448 | 1980673 ~ 1982326 (-) |
| G1332218 | NA | other | downstream | 853605 | 1893718 ~ 1894169 (-) |
| G1332206 | NA | other | downstream | 882680 | 1864566 ~ 1865094 (-) |
| G1332165 | LOC100194703 | other | downstream | 938242 | 1809023 ~ 1809532 (-) |
| G1333132 | NA | other | upstream | 245847 | 3027324 ~ 3029273 (-) |
| G1333345 | NA | other | upstream | 665353 | 3446830 ~ 3522295 (-) |
| G1334648 | NA | other | upstream | 1446707 | 4228184 ~ 4230047 (-) |
| G1334697 | NA | other | upstream | 1556659 | 4338136 ~ 4338659 (-) |
| G1334939 | NA | other | upstream | 2103811 | 4885288 ~ 4886398 (-) |
