LOC118939498 (LOC106591840)


Basic Information

Item Value
gene id LOC118939498
gene name LOC106591840
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 3694598 ~ 3730931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945979.1
cagacagacagggagcTAAACCTCTTGGAGAGTTCAACACTGAAGAAGTCTGCCAATGGTTCAGCAGCATCGGCCTGCACAAATGCCTTACCTACatcagagaGGCAGAGCTGTGTGGAACTGATATAACCTCAATAGACCTGACGACCCTGGAGGTTCTTCACATCTCcagtctggaggagagagagcagctcCTATCAGCTGTTTACAGAGAGCTACACCCGCCCAGCACCACCTCACAGAGACTGGACTCCCTGTTGGAAACTGTTGGTCCTAACAACGTAGAGAAATTCACAGCAGCATTGGTCGCCATGAGCCAATCAAAGTCCTTCCAACGTGTAAGCTGCCTCAACATGAATCAAACAAAATCCTTTAAATTCAGATGCAAAAGCCCTAACCCTGTGAACCAGAGGACCTCTCTGCTGATGGAGATCACCATAAATGCGTCGGTGCAGATAGTCCACCTGCGGACCCCCAGGGAAACCACGGTggggaaggtgatggagtcctgTCTAAGGATGCTAGGAATGACCGAGGACAAGGACCTCTTCAGCCTCACAGACAAACCAGGTTCTTCAGAGGAGCTGTCATCAGACCTGCAGATAGTTGACTTGGCAAGCTCAGAGAACAAATATCTAGAGTTGTATCTGTGCAAAAAGAATAAACCTAAAGGTGTTGTCAAGCCCCAATCCCCAGCTCCTTCTTTCAACGGGTCCCTTGGTGACGGTCCAGTCAATCAAACCCGCCAGGTACAAGGGGTCAGCCAGCCAGGTAAAGAGAAAAAGATACGCGAACTCAATGAACAGGTGGACTCTCTACAGAACGTCATCCTGCAGGTTCAGGAGATCCACCACGGGCTGGTAGCATTCTGTTCAGAGCTGAAGAGAATGGATGGGGAGGTGGATCTGTCAGGGCTGAGATCCCCAGAGCTGAAGCAGCGCCTTGGGCTGGCTCTGGGACTGCTCAGGGACAAGAGACACAGTCTAAAGAGCCTCCGAGAGTCCATGAGAAACACAGCCGTTCGCAGGAATGAGCGATCAGAGGTTCGTCTTCTGGATAAGATGAAGCTGAACTGTCAGGTGTTTAAAGAAGAAATCTCTCTGGTGCACCTCAATCGACAAGTAGCCCATCTACAGAAAGCACTTCAGGACAGCCAAGTCAAGGAGAGATCCCTCCAGTCCCAGTCTCACCAGAGGAAGTGTTCTACCCTGGGCCAACTGGTCACTCCCCAGTGTCCTGCCATGCTACTGGTTGTCCAGGAGAGCCGTGGGAAAGATGGGCGGTATGGATTCACCTTCCAACTCTCACAGGACAGAGGACTGGTGGTGATACAGGTGGACAACTCACATTCACCCCTCTGTCTGGAGGAcagATTGGTGGAGGTGAACGGGGTACCAGTGGTGGACCACAGCGAACAGGAGTTGAGCACCCTACTCCTCCTGGGACCCAGTGCTCAGATAGTGGTTCTGAGGAGACCTCCTCCTCCTGGGACCCAGTGCTCAGATAGTGGTTCTGAGGAGACCTAATCCTCCTGGGACCCAGTGCTCAGATAGTAGATCTGGGGAGACCTCCTCCTCCTGGGACCCAGTGCTCAGATAGTGGTTCTGAGGAGAACTCCTACTCCTGGGACCCCAGTGCTCAGATAGTGTTTCAGAGGAGACCTCCTCCTTCCCGCTTCAGACCTAGAAGACCCCCCTCCTGTTAGTCCCACCCCCATCCTCCCAGCCCCAGAAGAGCCCCTCCTATTAGTCTCACCACCAGTCACCATCCCAGTAGAACCACCTCCTAGCTCTCCTCCTCCCAGTCCCAGTCCGAGCAGACCCCCTCCTAGCTCTCCTCCTCCCAGTCCCAGTCCGAGCAGACCCCCTCCTAGCTCTCCtcctcccagtcccagtcccagtagaCCCCATCCTAGCTCTCCTCCTCCCAGTCAAAATCCCAGTAGAATCCCTCCTAGCTCTCATCTCAGTCTCAGTCCCAGTAGACTCCCTCCTAGCTCTCCTCCTCCCAGTACCCATCCCAGTAGAACCCCCTCATAGCTCTCCTCCTCCCAGGGCCAGTCCGAGCAGAACCCCTCCTAGCTCTCTTCCTCCCAGTCCCCAACCCAGTAGACCCCCTCCTAGCTCTCCTCCTCCCAGTCCCCATCCCAGTCGATCCCCTCCTAGCTCTCCTCCTCCCAGTCCCCATC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106591840

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945979.1 True 2188 mRNA 0.55 11 3694598 3730931

Neighbor

gene id symbol gene type direction distance location
LOC118939483 NA coding upstream 7505 3686543 ~ 3687093 (+)
LOC110492796 slx4ip coding upstream 492872 3065065 ~ 3201726 (+)
LOC110492798 LOC106590888 coding upstream 641110 2989203 ~ 3054026 (+)
memo1 LOC106578779 coding upstream 724992 2945412 ~ 2969606 (+)
trnah-gug-6 NA coding upstream 749538 2944989 ~ 2945060 (+)
btbd3b LOC106578575 coding downstream 135553 3866484 ~ 3902198 (+)
sptlc3 sptlc3 coding downstream 403486 4134417 ~ 4229378 (+)
tasp1 tasp1 coding downstream 514067 4244998 ~ 4337416 (+)
LOC110491218 LOC106578757 coding downstream 909267 4640198 ~ 4973348 (+)
LOC110491219 LOC106578758 coding downstream 1244589 4975520 ~ 4978736 (+)
G1333403 NA non-coding upstream 113100 3580806 ~ 3581498 (+)
G1333333 NA non-coding upstream 203623 3489931 ~ 3490975 (+)
G1333324 NA non-coding upstream 232897 3461101 ~ 3461701 (+)
G1333310 NA non-coding upstream 264288 3428000 ~ 3430310 (+)
G1333304 NA non-coding upstream 271216 3422910 ~ 3423382 (+)
G1333447 NA non-coding downstream 3774 3734705 ~ 3735812 (+)
G1333570 NA non-coding downstream 16311 3747242 ~ 3747512 (+)
G1333574 NA non-coding downstream 19706 3750637 ~ 3751000 (+)
G1333584 NA non-coding downstream 29980 3760911 ~ 3761147 (+)
G1333586 NA non-coding downstream 31201 3762132 ~ 3762372 (+)
G1332826 NA other upstream 463191 3230199 ~ 3231407 (+)
G1332701 NA other upstream 720798 2972808 ~ 2973800 (+)
LOC110491239 LOC106578780 other upstream 754658 2931169 ~ 2939940 (+)
heatr5b LOC106578753 other upstream 1385031 2295839 ~ 2571759 (+)
G1333963 NA other downstream 608907 4339838 ~ 4341823 (+)
G1334530 NA other downstream 1789009 5519940 ~ 5521230 (+)
G1334592 NA other downstream 1972904 5703835 ~ 5704946 (+)
G1335704 NA other downstream 2860045 6590976 ~ 6591915 (+)

Expression


Co-expression Network