LOC110491216 (LOC106591551)


Basic Information

Item Value
gene id LOC110491216
gene name LOC106591551
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 4483858 ~ 4493717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945988.1
TTGTCTTTATAAAGTAATGTACTGAGTGTTGCAATAAACTCTGGTTGTCTTTATAAAAGAGGTGTGGACCAGGTAATGTACTGAGTGTTGCAATGAACTCTGGTTGTCTTTATAAAAGAGGTGTGGACCAGGTAATGTACTGAGTGTTGCAATGAACTCTGGTTGTCTTTATAAAAGAGGTGTGCATCTTCGTGGGTCAGACATCTTGCTCAGTCACTCATACAGTAAACTATACAAAAGTTTCCTTCAAAGGCAAACGGACATCTATCTCAACAATGATGTTCAGCTTGATGCTGGTTCTGCTGGTCCCCGTGGCGGTACAGTCCTCTCTGCATCCAGTGGACTGTAACGAGGTGTACCAATCAGGTTCTGGACAGAATGGGGTTTACACTATTTATCCTGCAGGATCCACCTCACCTGTCCAGGTGTTCTGTGAGATGTCGATGGACAGTGCATTTTCAGGAAAGTGGACGGTGATTcagaacagacaggatggatCAGTGAACTTCCACAGGAAGTGGAATGAGTACAAGAGTGGGTTTGGGAGCGCAGCTGGAGAGTACTGGCTGGGACTGGAGACGATGCATCTCCTGACTATGAAAAAGACCTATGAGCTGAGGGTGGACATGGAGGACTTTGAGGGGAATGAGGTCTATGCTCAGTACTCCACCTTCTCTGTTGGACCAGAGGCTGAAGGGTACCCTCTAAAACTGGGttcattcaaagatggaggagCAGGAGATTCTATGACTCATCACAGTGGTCAGAAATTTACAACGTTAGATAAGGATCAGGACCTTAATGACAGCAACTGTGGCCAGATATACTACGGTGGATTTTGGTACAACAACTGCCATTGGACTAATCCCAATGGGATATACGCGTGGGGGGAGTCTGCCTACGGTGTTGGCATCAACTGGAGAACATGGAAAGGCTTCACATACTCCCTGAAAAGAATGACCATGAAGATCAGACCAGCCACTGGATAGAAGGGAAACACCTTAACTGTTAATTAAGCATCTCTATTTTCTAACAACATTTCTAAATCAACATTTTTAATAACAATGATTGCCATACAAAACATTTGTCCACCACTTGCACACATTAcgtttacctgggagggggtgTCTTTATTTCTGAGTAAAGTTTGTGTTTGGGTCTTCGGGGGGTATCAGTGGGTGCTGCTTTGCCATAGCAACAGAAACCTGACTGCAGTGGGGATGATGTGACTCCTACtcatcctctaactctctctgtttCCTACCCTAACCCACGGTCTGTTTCCTACCCTAACCCACAGTCTCTCTGTGTCATACCCTAACCAACTGTCTGTTTCCTACCCtaactcactgtctctctgtttcataCCCTAACCAACTGTCTGTTTCCTACCTTAACCCATTGTCTGTCTGTTTCATACCCTAACCAACTGTCTGTTTCCTACCCTAACTCACTGTCTATCTGTTTCATACCCTAacccactgtctgtctgtttcataCCCTAACCAACTGTCTGTTTCCTACCCTAACTCACTGTCTATCTGTTTCATACCCTAACCAACTGTCTGTTTCATACCCTAACCCACGGTCTCTCTGTTTCCTACCCTAacccactgtctgtctgtttcataccctaacacacagtctctctgtttcctaccctaacccactgtctgtctgtttcataCCCTAacccactgtctgtctgtttcctaccCTAACCGTCTGTTCCTACCCTAACCCACTGTCTGTTTCATACCCTAACCAACTGTCTGTTTCCTACCCTAACCCACTGTCTGTTACCTACCCTAACTAACTCTCTGTTACCTACCCTAACCCACTGTCTGTTACCTACCCTAACCAACTCTCTGTTTCCTACCCTAACCAACTCTCTGTT
>XM_036945990.1
GGTTGTCTTTATAAAGTAATGTACTGAGTGTTGCAATAAACTCTGGTTGTCTTTATAAAAGAGGTGTGGACCAGGTAATGTACTGAGTGTTGCAATGAACTCTGGTTGTCTTTATAAAAGAGGTGTGGACCAGGTAATGTACTGAGTGTTGCAATGAACTCTGGTTGTCTTTATAAAAGAGGTGTGCATCTTCGTGGGTCAGACATCTTGCTCAGTCACTCATACAGTTTCCTTCAAAGGCAAACGGACATCTATCTCAACAATGATGTTCAGCTTGATGCTGGTTCTGCTGGTCCCCGTGGCGGTACAGTCCTCTCTGCATCCAGTGGACTGTAACGAGGTGTACCAATCAGGTTCTGGACAGAATGGGGTTTACACTATTTATCCTGCAGGATCCACCTCACCTGTCCAGGTGTTCTGTGAGATGTCGATGGACAGTGCATTTTCAGGAAAGTGGACGGTGATTcagaacagacaggatggatCAGTGAACTTCCACAGGAAGTGGAATGAGTACAAGAGTGGGTTTGGGAGCGCAGCTGGAGAGTACTGGCTGGGACTGGAGACGATGCATCTCCTGACTATGAAAAAGACCTATGAGCTGAGGGTGGACATGGAGGACTTTGAGGGGAATGAGGTCTATGCTCAGTACTCCACCTTCTCTGTTGGACCAGAGGCTGAAGGGTACCCTCTAAAACTGGGttcattcaaagatggaggagCAGGAGATTCTATGACTCATCACAGTGGTCAGAAATTTACAACGTTAGATAAGGATCAGGACCTTAATGACAGCAACTGTGGCCAGATATACTACGGTGGATTTTGGTACAACAACTGCCATTGGACTAATCCCAATGGGATATACGCGTGGGGGGAGTCTGCCTACGGTGTTGGCATCAACTGGAGAACATGGAAAGGCTTCACATACTCCCTGAAAAGAATGACCATGAAGATCAGACCAGCCACTGGATAGAAGGGAAACACCTTAACTGTTAATTAAGCATCTCTATTTTCTAACAACATTTCTAAATCAACATTTTTAATAACAATGATTGCCATACAAAACATTTGTCCACCACTTGCACACATTAcgtttacctgggagggggtgTCTTTATTTCTGAGTAAAGTTTGTGTTTGGGTCTTCGGGGGGTATCAGTGGGTGCTGCTTTGCCATAGCAACAGAAACCTGACTGCAGTGGGGATGATGTGACTCCTACtcatcctctaactctctctgtttCCTACCCTAACCCACGGTCTGTTTCCTACCCTAACCCACAGTCTCTCTGTGTCATACCCTAACCAACTGTCTGTTTCCTACCCtaactcactgtctctctgtttcataCCCTAACCAACTGTCTGTTTCCTACCTTAACCCATTGTCTGTCTGTTTCATACCCTAACCAACTGTCTGTTTCCTACCCTAACTCACTGTCTATCTGTTTCATACCCTAacccactgtctgtctgtttcataCCCTAACCAACTGTCTGTTTCCTACCCTAACTCACTGTCTATCTGTTTCATACCCTAACCAACTGTCTGTTTCATACCCTAACCCACGGTCTCTCTGTTTCCTACCCTAacccactgtctgtctgtttcataccctaacacacagtctctctgtttcctaccctaacccactgtctgtctgtttcataCCCTAacccactgtctgtctgtttcctaccCTAACCGTCTGTTCCTACCCTAACCCACTGTCTGTTTCATACCCTAACCAACTGTCTGTTTCCTACCCTAACCCACTGTCTGTTACCTACCCTAACTAACTCTCTGTTACCTACCCTAACCCACTGTCTGTTACCTACCCTAACCAACTCTCTGTTTCCTACCCTAACCAACTCTCTGTT
>XM_036945989.1
ACTCTGGTTGTCTTTATAAAGTAATGTACTGAGTGTTGCAATAAACTCTGGTTGTCTTTATAAAAGAGGTGTGGACCAGGTAATGTACTGAGTGTTGCAATGAACTCTGGTTGTCTTTATAAAAGAGGTGTGCATCTTCGTGGGTCAGACATCTTGCTCAGTCACTCATACAGTAAACTATACAAAAGTTTCCTTCAAAGGCAAACGGACATCTATCTCAACAATGATGTTCAGCTTGATGCTGGTTCTGCTGGTCCCCGTGGCGGTACAGTCCTCTCTGCATCCAGTGGACTGTAACGAGGTGTACCAATCAGGTTCTGGACAGAATGGGGTTTACACTATTTATCCTGCAGGATCCACCTCACCTGTCCAGGTGTTCTGTGAGATGTCGATGGACAGTGCATTTTCAGGAAAGTGGACGGTGATTcagaacagacaggatggatCAGTGAACTTCCACAGGAAGTGGAATGAGTACAAGAGTGGGTTTGGGAGCGCAGCTGGAGAGTACTGGCTGGGACTGGAGACGATGCATCTCCTGACTATGAAAAAGACCTATGAGCTGAGGGTGGACATGGAGGACTTTGAGGGGAATGAGGTCTATGCTCAGTACTCCACCTTCTCTGTTGGACCAGAGGCTGAAGGGTACCCTCTAAAACTGGGttcattcaaagatggaggagCAGGAGATTCTATGACTCATCACAGTGGTCAGAAATTTACAACGTTAGATAAGGATCAGGACCTTAATGACAGCAACTGTGGCCAGATATACTACGGTGGATTTTGGTACAACAACTGCCATTGGACTAATCCCAATGGGATATACGCGTGGGGGGAGTCTGCCTACGGTGTTGGCATCAACTGGAGAACATGGAAAGGCTTCACATACTCCCTGAAAAGAATGACCATGAAGATCAGACCAGCCACTGGATAGAAGGGAAACACCTTAACTGTTAATTAAGCATCTCTATTTTCTAACAACATTTCTAAATCAACATTTTTAATAACAATGATTGCCATACAAAACATTTGTCCACCACTTGCACACATTAcgtttacctgggagggggtgTCTTTATTTCTGAGTAAAGTTTGTGTTTGGGTCTTCGGGGGGTATCAGTGGGTGCTGCTTTGCCATAGCAACAGAAACCTGACTGCAGTGGGGATGATGTGACTCCTACtcatcctctaactctctctgtttCCTACCCTAACCCACGGTCTGTTTCCTACCCTAACCCACAGTCTCTCTGTGTCATACCCTAACCAACTGTCTGTTTCCTACCCtaactcactgtctctctgtttcataCCCTAACCAACTGTCTGTTTCCTACCTTAACCCATTGTCTGTCTGTTTCATACCCTAACCAACTGTCTGTTTCCTACCCTAACTCACTGTCTATCTGTTTCATACCCTAacccactgtctgtctgtttcataCCCTAACCAACTGTCTGTTTCCTACCCTAACTCACTGTCTATCTGTTTCATACCCTAACCAACTGTCTGTTTCATACCCTAACCCACGGTCTCTCTGTTTCCTACCCTAacccactgtctgtctgtttcataccctaacacacagtctctctgtttcctaccctaacccactgtctgtctgtttcataCCCTAacccactgtctgtctgtttcctaccCTAACCGTCTGTTCCTACCCTAACCCACTGTCTGTTTCATACCCTAACCAACTGTCTGTTTCCTACCCTAACCCACTGTCTGTTACCTACCCTAACTAACTCTCTGTTACCTACCCTAACCCACTGTCTGTTACCTACCCTAACCAACTCTCTGTTTCCTACCCTAACCAACTCTCTGTT

Function

NR:

description
microfibril-associated glycoprotein 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945988.1 False 1897 mRNA 0.45 6 4483858 4493710
XM_036945990.1 False 1884 mRNA 0.46 6 4483858 4493712
XM_036945989.1 True 1845 mRNA 0.46 7 4483858 4493717
Loading

Neighbor

gene id symbol gene type direction distance location
ism1 ism1 coding downstream 20689 4418310 ~ 4463169 (-)
LOC118939499 NA coding downstream 66130 4416871 ~ 4417728 (-)
jag1b jag1 coding downstream 1166958 3214666 ~ 3316900 (-)
mkks mkks coding downstream 1419042 3054160 ~ 3064816 (-)
LOC110491225 LOC106578778 coding downstream 1553182 2881255 ~ 2930676 (-)
LOC118939500 LOC106578803 coding upstream 498828 4992545 ~ 5038804 (-)
LOC110492792 LOC106578787 coding upstream 552125 5045238 ~ 5241428 (-)
LOC110491233 LOC106589988 coding upstream 568572 5062289 ~ 5071638 (-)
LOC110491224 LOC106578801 coding upstream 587246 5080963 ~ 5121150 (-)
mrpl14 mrpl14 coding upstream 751748 5245465 ~ 5250142 (-)
G1334734 NA non-coding downstream 60669 4422671 ~ 4423189 (-)
G1334723 NA non-coding downstream 81075 4402319 ~ 4402783 (-)
G1334719 NA non-coding downstream 87312 4396164 ~ 4396546 (-)
G1334709 NA non-coding downstream 131566 4351935 ~ 4352292 (-)
G1334698 NA non-coding downstream 145801 4337746 ~ 4338057 (-)
G1334759 NA non-coding upstream 11678 4505395 ~ 4531303 (-)
G1334785 NA non-coding upstream 50682 4544399 ~ 4550088 (-)
G1334798 NA non-coding upstream 102952 4596669 ~ 4662899 (-)
G1334799 NA non-coding upstream 103258 4596975 ~ 4598465 (-)
G1334801 NA non-coding upstream 108771 4602488 ~ 4607547 (-)
G1334697 NA other downstream 145199 4338136 ~ 4338659 (-)
G1334648 NA other downstream 253811 4228184 ~ 4230047 (-)
G1333345 NA other downstream 961563 3446830 ~ 3522295 (-)
G1333132 NA other downstream 1454585 3027324 ~ 3029273 (-)
G1332878 NA other downstream 2255455 2221111 ~ 2228403 (-)
G1334939 NA other upstream 391571 4885288 ~ 4886398 (-)
G1335108 NA other upstream 793316 5287033 ~ 5288155 (-)
G1335145 NA other upstream 894241 5387958 ~ 5389383 (-)

Expression

LOC110491216(LOC106591551) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1000.
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LOC110491216(LOC106591551) Expression in each Bioproject

Bar chart with 19 bars.
LOC110491216(LOC106591551) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2500.
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Co-expression Network