LOC110491219 (LOC106578758)


Basic Information

Item Value
gene id LOC110491219
gene name LOC106578758
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 4975520 ~ 4978736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564570.2
GCTGATTCCTTTAAACACCACACTGTCCTTGATATTCTTGTGAACTTCCTCTTTGACATCGGCTGTGTGTTTCAGCGCCTTGCGTGATAGTTCACTCCATCTCAAGTGCATTTTTGTGTTAACACGTTGCGTTGAAATGCTACTTAACGCTTTATCGAGTCGGATAAAGCTCATTTCAGGATGTTCGTTGGCGTTCACCGCCGCCCGGATGTATTCTGCTGGCCCGGCAGCCACTAACCCAGTTGTCTACTTTGACATTGCTGCAGACAACCAGTTCCTCGGGAGAGTAACCTTCGAGCTGAATGCTGATGTGGTACCAAAAACAGCAGAGAACTTCAGAGTCCTGTGCACAGGAGCAAATGGTTTTGGCTACAAAGGGTCCGTCTTCCACAGAGTCATTCCTCAGTTCATGTGCCAGGGAGGAGACTTTACTAATCACAATGGAACCGGAGGGAAATCGATCTACGGAACCAAATTCGAAGATGAGAACTTCAAGCTGAAGCACACAGGACCTGGCATTTTGTCAATGGCCAACGCTGGGCCCAACACCAACGGCTCTCAGTTCTTCATCTGCACCGACAAGACAGAGTGgttggatgggaaacATGTTGTGTTTGGCAGTGTGACCGAGGGACTGGATGTGATCAGGAAAGTGGAGTCGTTCGGATCCCGTTCTGGGCGTACCTCCAAGAGGATCACCATCGCAGACTGTGGAGAGCTTAAGTAGCTTTGGACTggccaaatggcaccttattccctctacagtgcactacttttgaccagagtcctatggaccAGAGCCTtaatagtgcactatagagggaactgTTATGGAGTAGGTGTGACGGTTTCTGAACCCCCTGCTACTGTGATTTTCAATGTGAAATCATCTACAGTGGATCTACTGTTTACAATACAGACTGGAACatgagctgcctgtgtaaacacagcctaatTTTATTGGTGAAAGATCTGAGCTCATTGATCAAAATAGCAATTATTAGCAAAATATCAGGAAAGGATTGTGTCTTTAAACACATCAATTGTGTCTGTATGGCATGTTGAcaagtgtttttgtttttttcagggATATTATGTCAAACACTGTTTTTTAATGAGGAAAGGGAAAGTTAGACTTATCCTGTGGGTTTGATCTTTTCGATGGAAGTTTTCAACCACCCACTTACTGGGCCAGTGCTAAGCTAACTCATTCAATGTGAACGTATCTGATAAACTAGTTGAGGCCTGTCCGTACACCTCAGTTAACCAGtttgtctgtaaaaaaaaaaaaaaagaaagagagaaaggacaaTGATTCAGGAAAGCCTAAAATGTTTTGTAACAGGGACTGGCAGTGACATCTGGAATAAACGTCAGATGGGTTTT

Function

NR:

description
peptidyl-prolyl cis-trans isomerase A-like

GO: NA

KEGG:

id description
K09565 PPIF; peptidyl-prolyl isomerase F (cyclophilin D)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564570.2 True 1386 mRNA 0.45 6 4975520 4978736

Neighbor

gene id symbol gene type direction distance location
LOC110491218 LOC106578757 coding upstream 2172 4640198 ~ 4973348 (+)
tasp1 tasp1 coding upstream 638104 4244998 ~ 4337416 (+)
sptlc3 sptlc3 coding upstream 746142 4134417 ~ 4229378 (+)
btbd3b LOC106578575 coding upstream 1073322 3866484 ~ 3902198 (+)
LOC118939498 LOC106591840 coding upstream 1244589 3694598 ~ 3730931 (+)
trnaa-ugc-125 NA coding downstream 126306 5105042 ~ 5105117 (+)
LOC110491235 LOC106578800 coding downstream 177154 5155890 ~ 5196581 (+)
LOC110492801 LOC106589958 coding downstream 217958 5196694 ~ 5243823 (+)
LOC110491229 LOC105028001 coding downstream 271574 5245325 ~ 5344475 (+)
LOC110492803 LOC106589963 coding downstream 372815 5351418 ~ 5390024 (+)
G1334289 NA non-coding upstream 8686 4966196 ~ 4966834 (+)
G1334235 NA non-coding upstream 116546 4856360 ~ 4858974 (+)
G1334231 NA non-coding upstream 130848 4844145 ~ 4844672 (+)
G1334230 NA non-coding upstream 131382 4843806 ~ 4844138 (+)
G1334222 NA non-coding upstream 150006 4823600 ~ 4825514 (+)
G1334293 NA non-coding downstream 5943 4984679 ~ 4984954 (+)
G1334304 NA non-coding downstream 14370 4993106 ~ 4993569 (+)
G1334305 NA non-coding downstream 14844 4993580 ~ 4994085 (+)
G1334313 NA non-coding downstream 41830 5020566 ~ 5021627 (+)
G1334329 NA non-coding downstream 74460 5053196 ~ 5053495 (+)
G1333963 NA other upstream 634652 4339838 ~ 4341823 (+)
G1332826 NA other upstream 1744113 3230199 ~ 3231407 (+)
LOC110492796 slx4ip other upstream 1778269 3065065 ~ 3201726 (+)
G1332701 NA other upstream 2001720 2972808 ~ 2973800 (+)
G1334530 NA other downstream 541204 5519940 ~ 5521230 (+)
G1334592 NA other downstream 725099 5703835 ~ 5704946 (+)
G1335704 NA other downstream 1612240 6590976 ~ 6591915 (+)
G1335763 NA other downstream 1785576 6764312 ~ 6768586 (+)
kif20ba LOC106589940 other downstream 2056138 7024970 ~ 7073332 (+)

Expression


Co-expression Network