ly6pge (LOC106578825)


Basic Information

Item Value
gene id ly6pge
gene name LOC106578825
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 5658729 ~ 5672106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945849.1
GAAGATGGGATTAAGATCAGAGGGGTTTAGCAGCAAACAACCTGCTATTCATTGTGTGATCCCATCTCTCCAGGGAACGACCAGCAAGCGAAAAAACTACGTATTTTCATTGTGCAATCTCATCGTTCCAGGGAAGGACCACGAAGCAAACAACCTGGTTTTCATTGTGTGATCACATCGCTCAAGGGAAGGAGACCACAAAGGAAGGATCAGCATCATCACCAACAACATGAGAGCTTCCCAGAGCGCTATTCTGCTCCTCGTCTCCCTACTCTTTCTCATTAACGACAGTGAAGCCCTACAATGCTATACCTGCATGGGTTCTAGTGATGAAGACTGCAATCGTCAGGGCTCAAAAACCTGTCCAAGCTACTCTGACGCTTGCGCTGTAGTACGAGGACACGGAAgcggAGTGATGAAGTCCTGCTCCTACAAGTCTTTCTGTAGCCAGGCCAACAGTCAGGGTTACCGGTCACCAGGGGTCAGAGTTCACTGCTGTTTCTCTGATGACTGCAACGTGACAGGAAACGTATCCAAGCTGGAAGGAAGTCTCAGCTACCTGTTGCTCCTCCTTCCCCTGCTCCTCCACTGGATCTCAAACTAAACATATAACCCAGCACAAACCAACAGCCATGCCAACTACCCCACCACTACCCCACCAACCTCCCTTCTCTACCCTACTCTCAAACTAAACCCAGCACAAACCAACAGCCATGCCAACCACCCCACCTACCTCCCTTCCCTACCCTCTTCTCAAACTAAACCCAGCACAAACCAACAGCCATGCCAACTACCCCACCTACCTCCCttccctaccctactctacccgaCTCAAACCCCACCTCTCCAAGCCTCAGCTACCATCCCCACTCTGGCCGACTACGCCATCTAACTCTGCCTATCTAAAGTATCTAAAGTAACACACAATAAAATAACCATTGATATCACCATATAACCAACCCAGAACAAACCAACCGATAACAACCCAGAACAAACCCAAACCAGAACAACCCCAAACCAGAACAACCCTAACTCAGAACAAACCCAgaacaaccccaaccccaactcaGAA
>XM_036945848.1
AAGATGGGATTAAGATCAGAGGGGTTTAGCAGCAAACAACCTGCTATTCATTGTGTGATCCCATCTCTCCAGGGAACGACCAGCAAGCGAAAAAACTACGTATTTTCATTGTGCAATCTCATCGTTCCAGGGAAGGACCACGAAGCAAACAACCTGGTTTTCATTGTGTGATCACATCGCTCAAGGGAAGGAGACCACAAAGGAAGGATCAGCATCATCACCAACAACATGAGAGCTTCCCAGAGCGCTATTCTGCTCCTCGTCTCCCTACTCTTTCTCATTAACGACAGTGAAGCCCTACAATGCTATACCTGCATGGGTTCTAGTGATGAAGACTGCAATCGTCAGGGCTCAAAAACCTGTCCAAGCTACTCTGACGCTTGCGCTGTAGTACGAGGACACGGAAGTGAGTTAAACAgcggAGTGATGAAGTCCTGCTCCTACAAGTCTTTCTGTAGCCAGGCCAACAGTCAGGGTTACCGGTCACCAGGGGTCAGAGTTCACTGCTGTTTCTCTGATGACTGCAACGTGACAGGAAACGTATCCAAGCTGGAAGGAAGTCTCAGCTACCTGTTGCTCCTCCTTCCCCTGCTCCTCCACTGGATCTCAAACTAAACATATAACCCAGCACAAACCAACAGCCATGCCAACTACCCCACCACTACCCCACCAACCTCCCTTCTCTACCCTACTCTCAAACTAAACCCAGCACAAACCAACAGCCATGCCAACCACCCCACCTACCTCCCTTCCCTACCCTCTTCTCAAACTAAACCCAGCACAAACCAACAGCCATGCCAACTACCCCACCTACCTCCCttccctaccctactctacccgaCTCAAACCCCACCTCTCCAAGCCTCAGCTACCATCCCCACTCTGGCCGACTACGCCATCTAACTCTGCCTATCTAAAGTATCTAAAGTAACACACAATAAAATAACCATTGATATCACCATATAACCAACCCAGAACAAACCAACCGATAACAACCCAGAACAAACCCAAACCAGAACAACCCCAAACCAGAACAACCCTAACTCAGAACAAACCCAgaacaaccccaaccccaactcaGAA

Function

NR:

description
ly6/PLAUR domain-containing protein 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945849.1 False 1072 mRNA 0.49 3 5658729 5672106
XM_036945848.1 True 1083 mRNA 0.49 3 5658730 5672106

Neighbor

gene id symbol gene type direction distance location
tacc2 LOC106578818 coding upstream 5858 5536927 ~ 5652871 (+)
LOC110491251 LOC106578785 coding upstream 246095 5398539 ~ 5412634 (+)
LOC110492803 LOC106589963 coding upstream 268705 5351418 ~ 5390024 (+)
LOC110491229 LOC105028001 coding upstream 316703 5245325 ~ 5344475 (+)
LOC110492801 LOC106589958 coding upstream 414906 5196694 ~ 5243823 (+)
LOC118939486 unc5b coding downstream 451521 6123627 ~ 6216822 (+)
slc29a3 slc29a3 coding downstream 580577 6252683 ~ 6289144 (+)
LOC110491277 LOC106578812 coding downstream 661234 6333340 ~ 6357849 (+)
LOC110491273 LOC106578809 coding downstream 688482 6334443 ~ 6382556 (+)
mcu mcu coding downstream 854689 6526795 ~ 6651585 (+)
G1334561 NA non-coding upstream 25344 5632617 ~ 5633385 (+)
G1334482 NA non-coding upstream 60987 5596602 ~ 5597742 (+)
G1334551 NA non-coding upstream 64896 5591995 ~ 5593833 (+)
G1334544 NA non-coding upstream 84730 5573110 ~ 5573999 (+)
G1334580 NA non-coding downstream 4726 5676832 ~ 5677763 (+)
G1334581 NA non-coding downstream 5968 5678074 ~ 5678361 (+)
G1334591 NA non-coding downstream 27840 5699946 ~ 5700355 (+)
G1334597 NA non-coding downstream 60951 5733057 ~ 5733332 (+)
G1334601 NA non-coding downstream 73112 5745218 ~ 5745497 (+)
G1334530 NA other upstream 137499 5519940 ~ 5521230 (+)
LOC110491218 LOC106578757 other upstream 721050 4640198 ~ 4973348 (+)
G1333963 NA other upstream 1317861 4339838 ~ 4341823 (+)
G1332826 NA other upstream 2427322 3230199 ~ 3231407 (+)
LOC110492796 slx4ip other upstream 2461478 3065065 ~ 3201726 (+)
G1334592 NA other downstream 31729 5703835 ~ 5704946 (+)
G1335704 NA other downstream 918870 6590976 ~ 6591915 (+)
G1335763 NA other downstream 1092206 6764312 ~ 6768586 (+)
kif20ba LOC106589940 other downstream 1362768 7024970 ~ 7073332 (+)
G1335921 NA other downstream 1386795 7058901 ~ 7059543 (+)

Expression


Co-expression Network