XLOC_032302 (rbp7b)


Basic Information

Item Value
gene id XLOC_032302
gene name rbp7b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 45932241 ~ 45933368 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063065
CAGTTAAATTCCAGCATCTAACAGGAGCTACAGCTCACAGAAACACTTCAGGATCAGCATCAAACATGCCTGTAAACTATAGTGGAACTTGGGACATAGTGGACAACCACAACTTTGAAGGTTACATGGTGGCTCTTGACTACAGTCAACTGGGACAATGACAGACTCGTGTGCATTCAAAAAGGAGAAAAGAAGAACAGAGGATGGACACACTGGATGGAGGGAGATACTCTTTACCTGGAACTTACATGCGAAGACCAGATCTGCAAACAAACCTACAAAAGATCTGCCTGAACCATTGTGGCGAAATAAACCTGCTTTCATGTTTAAGAGTGTACGATCTGCATTAAACAGTTCTTAATTCATTGAATGGAttaaacttacaaaataaaaaaatctacatgAA
>TCONS_00063066
CACAGAAACACTTCAGGATCAGCATCAAACATGCCTGTAAACTATAGTGGAACTTGGGACATAGTGGACAACCACAACTTTGAAGGTTACATGGTGGCTCTTGGTATTGACTTTGCCACACGAAAGATAGCGGGGATGCTAAAGCCACAGAAGATTTTTGAGCAAGACGGAGACTCTTTCACCATTAAAACTTTAACAACTTTCAGAAATTACTCCAGTTCGTTTAAAATCGGAGAAGAGTTTGAGGAAATCACCAAAggattggacaatagaaaatgcCAGACTACAGTCAACTGGGACAATGACAGACTCGTGTGCATTCAAAAAGGAGAAAAGAAGAACAGAGGATGGACACACTGGATGGAGGGAGATACTCTTTACCTGGAACTTACATGCGAAGACCAGATCTGCAAACAAACCTACAAAAGATCTGCCTGAACCATTGTGGCGAAATAAACCTGCTTTCATGTTTAAGAGTGTACGATCTGCATTAAACAGTTCTTAATTCATTGAATGGAttaaacttacaaaataaaaaaatctacatgAAGAGGAAAGCAGGAGTGTCTTTAAACATTTATTGACTAATAAAACATCTGTAACTTTTCATATTTGAattcaaaagtaataaaaaataccaTCTAATCAATGTATTAAAAGTGCTGCTGCAATAAATTGATTTTTCAAGATCAAAAA

Function

symbol description
rbp7b Predicted to enable lipid binding activity. Is expressed in several structures, including hypochord; pleuroperitoneal region; presumptive floor plate; presumptive hypochord; and segmental plate. Orthologous to human RBP7 (retinol binding protein 7).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-134 Predicted to enable lipid binding activity. Is expressed in several structures, including hypochord; pleuroperitoneal region; presumptive floor plate; presumptive hypochord; and segmental plate. Orthologous to human RBP7 (retinol binding protein 7).

Ensembl:

ensembl_id ENSDARG00000070486

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063065 False 406 nonsense_mediated_decay 0.40 3 45932241 45933222
TCONS_00063066 True 696 mRNA 0.36 4 45932276 45933368

Neighbor

gene id symbol gene type direction distance location
XLOC_032301 h6pd coding upstream 2776 45918981 ~ 45929465 (+)
XLOC_032299 cntn4 coding upstream 94138 45494227 ~ 45838103 (+)
XLOC_032300 LO018004.1 coding upstream 326845 45605280 ~ 45605396 (+)
XLOC_032297 LO017951.1 coding upstream 555483 45346808 ~ 45376758 (+)
XLOC_032298 CABZ01009812.1 coding upstream 576716 45355409 ~ 45355525 (+)
XLOC_032303 cenps coding downstream 1314 45934682 ~ 45937000 (+)
XLOC_032304 BX663614.1 coding downstream 92478 46025846 ~ 46025963 (+)
XLOC_032305 NA coding downstream 325452 46258820 ~ 46309060 (+)
XLOC_032306 NA coding downstream 376368 46309736 ~ 46320528 (+)
XLOC_032307 NA coding downstream 387325 46320693 ~ 46337096 (+)
XLOC_032295 NA non-coding upstream 848952 44987628 ~ 45083289 (+)
XLOC_032292 NA non-coding upstream 1126653 44400642 ~ 44805588 (+)
XLOC_032314 CU639408.1 non-coding downstream 816138 46749506 ~ 46749624 (+)
XLOC_032315 NA non-coding downstream 837327 46770695 ~ 46975247 (+)
XLOC_032316 CU634018.1 non-coding downstream 936816 46870184 ~ 46870298 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_12565541_12566461 RBP7B, RBP7 coding CI01000340 null 12564231 ~ 12566678 (+)