Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_032303 |
| gene name | cenps |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 45934682 ~ 45937000 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| cenps | Predicted to enable chromatin binding activity. Predicted to be involved in replication fork processing and resolution of meiotic recombination intermediates. Predicted to act upstream of or within DNA repair; cell division; and kinetochore assembly. Predicted to be located in kinetochore and nucleus. Predicted to be part of FANCM-MHF complex and Fanconi anaemia nuclear complex. Orthologous to several human genes including CENPS-CORT (CENPS-CORT readthrough). |
| id | name | namespace |
|---|---|---|
| GO:0031297 | replication fork processing | biological_process |
| GO:0000712 | resolution of meiotic recombination intermediates | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0051382 | kinetochore assembly | biological_process |
| GO:0000776 | kinetochore | cellular_component |
| GO:0071821 | FANCM-MHF complex | cellular_component |
| GO:0043240 | Fanconi anaemia nuclear complex | cellular_component |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| ko03460 | Fanconi anemia pathway |
| ko03036 | Chromosome and associated proteins |
| ko03400 | DNA repair and recombination proteins |
| id | description |
|---|---|
| ZDB-GENE-080723-52 | Predicted to enable chromatin binding activity. Predicted to be involved in replication fork processing and resolution of meiotic recombination intermediates. Predicted to act upstream of or within DNA repair; cell division; and kinetochore assembly. Predicted to be located in kinetochore and nucleus. Predicted to be part of FANCM-MHF complex and Fanconi anaemia nuclear complex. Orthologous to several human genes including CENPS-CORT (CENPS-CORT readthrough). |
| ensembl_id | ENSDARG00000070485 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00063067 | False | 931 | mRNA | 0.37 | 5 | 45934682 | 45937000 |
| TCONS_00063068 | True | 609 | lncRNA | 0.39 | 4 | 45934767 | 45936653 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_032302 | rbp7b | coding | upstream | 1314 | 45932241 ~ 45933368 (+) |
| XLOC_032301 | h6pd | coding | upstream | 5217 | 45918981 ~ 45929465 (+) |
| XLOC_032299 | cntn4 | coding | upstream | 96579 | 45494227 ~ 45838103 (+) |
| XLOC_032300 | LO018004.1 | coding | upstream | 329286 | 45605280 ~ 45605396 (+) |
| XLOC_032297 | LO017951.1 | coding | upstream | 557924 | 45346808 ~ 45376758 (+) |
| XLOC_032304 | BX663614.1 | coding | downstream | 88846 | 46025846 ~ 46025963 (+) |
| XLOC_032305 | NA | coding | downstream | 321820 | 46258820 ~ 46309060 (+) |
| XLOC_032306 | NA | coding | downstream | 372736 | 46309736 ~ 46320528 (+) |
| XLOC_032307 | NA | coding | downstream | 383693 | 46320693 ~ 46337096 (+) |
| XLOC_032308 | FAM107A | coding | downstream | 404306 | 46341306 ~ 46346978 (+) |
| XLOC_032298 | CABZ01009812.1 | non-coding | upstream | 579157 | 45355409 ~ 45355525 (+) |
| XLOC_032295 | NA | non-coding | upstream | 851393 | 44987628 ~ 45083289 (+) |
| XLOC_032292 | NA | non-coding | upstream | 1129094 | 44400642 ~ 44805588 (+) |
| XLOC_032314 | CU639408.1 | non-coding | downstream | 812506 | 46749506 ~ 46749624 (+) |
| XLOC_032315 | NA | non-coding | downstream | 833695 | 46770695 ~ 46975247 (+) |
| XLOC_032316 | CU634018.1 | non-coding | downstream | 933184 | 46870184 ~ 46870298 (+) |
