XLOC_032306


Basic Information

Item Value
gene id XLOC_032306
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 46309736 ~ 46320528 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063073
ACGATCGGCCAATCACACGCCGCTTCCTCCTTTACGTCATCTGACAGGTAGAAGTACTAGGAAGTAAACGACAACAGAAATGGCGAGAAAGTCGCTCAAATTTAGCCACTACTCTAAAATGTTACTCAATTTGATTCTATATAGTGTTTTTTGGGAGTTCGTATTTGCCTTTTCGACACGTCGCGACTCAAGACAGTCTGGAAGTTCGGAGAAACCCACTTCAGCTGCTCCAAATGATCAACAGGTTGTAAGGCTTCATTCAGGAGTTATTGCGTCTGTTGTGGTCGTTGTTATAGGTGCAACAGCAGCTGCTTTCTTCATCATACGCAAATACTGCTTTCCACAGAGtaatgCTACCTATAGATACTCAGAACTGCAACAAATGGAAGAACAGAATACAGCGATAGATCAGGAAGATTCAGATGAGGATCTTTTGGAGTGATCGTACCACAATTTATCCTTCACATATCTCTTACTTTTTAATACTGTGACTTTATATGGCCCAAAGCATCACATGGGTCATTTACAAACCACAAGGAGTTCCTGAAATATTTATTTCTCTTCTCTTCTATTCCTCGGAATGAATACCAGTTAAATTTAGCTGGTGAAATTGGTCAGAATTTTAGAGCCAAGATGTCTAGTGGCTCAGAAATATGAAGTTGCACATCAGAGATGAAAGTTACTGTTTTATAACTTATGAGAAGATCTGTTATAATGGCCATCCCTTAAAGCTTGGTCAAACTGCTTTTTTAACAGCACTGATGAACGTATTAGGTATTTTCTTGACTTTCTCAATGCAATGTTGTACCAAAGTCTGTTGAAATGATTGTTTCCCTTTATTTATTGCGAATGTTTGTGCCTGACTTTTAACAGCTTCATGATCTCAGGGTTGTTCACACTGGAAACTGAACACTGCCAGAAGCCCCAACTGACTATAATCCCATCTTTTCAACTGTAAAAGTTGATTTTACATTTCAGTGCCTTACTGAAATTGGTGTATTCATCAACTATATTTACTCTCTTATGCTGGTATTGGTATTTGCTGATGGCAGTGTTCAATATGAGCTGTATTAAAATGGAATAGTTCTCCcacaaattaaaatttacttGCATTACTcgcccttaagtggttccaaaatgtttttactttttttttgtttaacacaaaacaagatattttgaagaatgttgtaaaccgtCTACCATGTTCTAAAAAcatctactatggaagtcattggttaccAGTTttaacattcttcgaaatatcttcttatgcgttcaacagaaaaaagaatctCGGACAGGTTTGTGACAattaaaggttgagtaaatgatgacagaataaaaaattttggtgaactaaccctttaaagtgaTGAAGAAAATACAGCAATATTATGTACCATAACTGTATTTCTAAAAGCTCGGTTCatgattatgaattatttttaatgattgaattcttcagatttgttttgtatgtttgcacTTTCTTAACTAAGACTACTTCTTAATACTTGActgtgtttaaataaattaatatacatt

Function

GO:

id name namespace
GO:1903371 regulation of endoplasmic reticulum tubular network organization biological_process
GO:1903373 positive regulation of endoplasmic reticulum tubular network organization biological_process
GO:0010639 negative regulation of organelle organization biological_process
GO:0006996 organelle organization biological_process
GO:0033043 regulation of organelle organization biological_process
GO:0098826 endoplasmic reticulum tubular network membrane cellular_component
GO:0042802 identical protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063073 True 1548 lncRNA 0.35 4 46309736 46320528

Neighbor

gene id symbol gene type direction distance location
XLOC_032305 NA coding upstream 676 46258820 ~ 46309060 (+)
XLOC_032304 BX663614.1 coding upstream 283773 46025846 ~ 46025963 (+)
XLOC_032303 cenps coding upstream 372736 45934682 ~ 45937000 (+)
XLOC_032302 rbp7b coding upstream 376368 45932241 ~ 45933368 (+)
XLOC_032301 h6pd coding upstream 380271 45918981 ~ 45929465 (+)
XLOC_032307 NA coding downstream 165 46320693 ~ 46337096 (+)
XLOC_032308 FAM107A coding downstream 20778 46341306 ~ 46346978 (+)
XLOC_032309 pbrm1l coding downstream 86037 46406565 ~ 46431597 (+)
XLOC_032310 stau1 coding downstream 111320 46431848 ~ 46454823 (+)
XLOC_032311 si:dkey-7k24.5 coding downstream 160496 46481024 ~ 46494084 (+)
XLOC_032300 LO018004.1 non-coding upstream 704340 45605280 ~ 45605396 (+)
XLOC_032298 CABZ01009812.1 non-coding upstream 954211 45355409 ~ 45355525 (+)
XLOC_032295 NA non-coding upstream 1226447 44987628 ~ 45083289 (+)
XLOC_032293 NA non-coding upstream 1512177 44721192 ~ 44797559 (+)
XLOC_032314 CU639408.1 non-coding downstream 428978 46749506 ~ 46749624 (+)
XLOC_032315 NA non-coding downstream 450167 46770695 ~ 46975247 (+)
XLOC_032316 CU634018.1 non-coding downstream 549656 46870184 ~ 46870298 (+)
XLOC_032317 NA non-coding downstream 659589 46980117 ~ 46981872 (+)
XLOC_032318 CABZ01055225.1 non-coding downstream 957611 47278139 ~ 47278257 (+)
XLOC_032292 NA non-coding upstream 1504148 44400642 ~ 44805588 (+)

Expression


Co-expression Network