LOC110491322 (LOC106589467)


Basic Information

Item Value
gene id LOC110491322
gene name LOC106589467
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 9133541 ~ 9138698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468803.2
TATGGCGCTTCATATGTAATTTGGCGAGGCGGATTCCCAGCTACTGTATTCAAATTAGATGCCCTATATTAATTTATTACACCGACCTGAAGGGGAGTGTTCTGtacacagatacactgtagtgATGGAGGCCCACAATTTGTCCTGCATCATTTGTTTGGATCCCTTCACCGTCCCAGTCACCGTCCCATGCGGTCGAGACTGCATCACGGCTCACTGTGACACGAAGTCCATGTCCGATATGCCCTGTCTGCAATGAGAAATTCACCACCAGGCTTGTCCTGAATCGCAACGTGTCCCTGTCCTCTTTGGCTGAGGCCTCAGCGAACAGTGCCGGTGCATCCGGTAGAGACACTGTACCTGTTATGAGGGGCGACATGGCCAGAGCCACGCCCCTGATTCTGTGTGGCCGACACAAGAAGCCCCTGGTGTACTACTGCCGGACAGACAACGTGTGTGTGCTGTGAGTGTGCCATCTCTGAGTGTAAGAACCACGAGGAGGTGCTGGTGGAGTGTGAGAGGGAGAACCGAGAGTCACTACTGTGGAGGAAGAGTGTAGAGGTGGGAATATGTATAGAGGAGACTGAAAGGAGCTGGGCTGACAGAGAATATCGCCAAAGCCAagACCGCTGCACTCTGACCCTCGTACGGCCAACAGTCACCTGCTACTCTCCCAGGAGGAGCGCTGCGCCGTGTCCCCGCCCACGAGACTCGCCAAGACCACACCCGGCAGGTGCTCTGCTTCAAACACAGAAAGCAGTACTGGGAGCTGGAGGTGTCCAAGCCATGGGTCTACCTGGGGGTCAGAGTGTGAAGGCCATGGTAGCCCAGAGCAGGGGGTCAGAGTGTGAAGGCCATGGGCCTACCTGGGGGTCAGAGTGTGAAGGCCATGGTAGCCCAGAGCAGGGGGTCACAGTGTGAAGGCCATGGTAGCCCAGAGCAGGGGGTCAGAGTGTGAAGGCCATGGTAGCCCAGAGCAGGGGGTCAGAGTGTGAAGGCCATGGTAGCCCAGAGCAGGGCTATTCAACTGACAACAGGGGGGAGCAGTGTAACTGGCTtccaggtccagagttgagtttgggGACTATAGAATTGTACCTATGTCTTTTGAGACTTCCCAACATAACCTTTGACCCCTGCGTCTCTCCCCCAGTTCACCTATGAGGGCATCCCCAGGAAGGAAAAGGGAAAGAGTAGCATGGTGGTAATGAACGATCTGTCCTGGAGCCTCCAGCTGAACGCCTGGCACAGCGGGCGCCGGGAGACGGTGGCTGGTCACTACCACCACATTGTAATGCTGCTGGATTACGAGGCGGGAACGCTGACGTACTACGAAGACAGGCAGATGAGGCTGCATTCCTTCTACTGTGCCTTCACTCAGGAGCTGTTCCCCCGCCTGTCGGATAGGGGAGGGCGTCAGCGTCACCCTCTGCTCGCCATGACAACACGAAAGGGAACAACTGAGCTAACACTGTCATAAGGGACTAGTCTTGCAAAGCTGATGAGTGTTTTGATCTCTCCTTACTGTACAGATGTTTTTACAGTCCTGTTGTGGGACACGGACTTGAACGGGAGCGACTAGtaagtacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtattttttttgtgaagaatcaacaacaag
>TU1530625
GCGGATTCCCAGCTACTGTATTCAAATTAGATGCCCTATATTAATTTATTACACCGACCTGAAGGGGAGTGTTCTGtacacagatacactgtagtgATGGAGGCCCACAATTTGTCCTGCATCATTTGTTTGGATCCCTTCACCGTCCCAGTCACCGTCCCATGCGGTCGAGACTGCATCACGGCTCACTGTGACACGAAGTCCATGTCCGATATGCCCTGTCTGCAATGAGAAATTCACCACCAGGCTTGTCCTGAATCGCAACGTGTCCCTGTCCTCTTTGGCTGAGGCCTCAGCGAACAGTGCCGGTGCATCCGGTAGAGACACTGTACCTGTTATGAGGGGCGACATGGCCAGAGCCACGCCCCTGATTCTGTGTGGCCGACACAAGAAGCCCCTGGTGTACTACTGCCGGACAGACAACGTGTGTGTGCTGTGAGTGTGCCATCTCTGAGTGTAAGAACCACGAGGAGGTGCTGGTGGAGTGTGAGAGGGAGAACCGAGAGTCACTACTGTGGAGGAAGAGTGTAGAGGTGGGAATATGTATAGAGGAGACTGAAAGGAGCTGGGCTGACAGAGAATATCGCCAAAGCCAagACCGCTGCACTCTGACCCTCGTACGGCCAACAGTCACCTGCTACTCTCCCAGGAGGAGCGCTGCGCCGTGTCCCCGCCCACGAGACTCGCCAAGACCACACCCGGCAGGTGCTCTGCTTCAAACACAGAAAGCAGTACTGGGAGCTGGAGGTGTCCAAGCCATGGGTCTACCTGGGGGTCAGAGTGTGAAGGCCATGGTAGCCCAGAGCAGGGGGTCAGAGTGTGAAGGCCATGGGCCTACCTGGGGGTCAGAGTGTGAAGGCCATGGTAGCCCAGAGCAGGGGGTCACAGTGTGAAGGCCATGGTAGCCCAGAGCAGGGGGTCAGAGTGTGAAGGCCATGGTAGCCCAGAGCAGGGGGTCAGAGTGTGAAGGCCATGGTAGCCCAGAGCAGGGCTATTCAACTGACAACAGGGGGGAGCAGTGTAACTGGCTtccaggtccagagttgagtttgggGACTATAGAATTGTACCTATGTCTTTTGAGACTTCCCAACATAACCTTTGACCCCTGCGTCTCTCCCCCAGTTCACCTATGAGGGCATCCCCAGGAAGGAAAAGGGAAAGAGTAGCATGGTGGTAATGAACGATCTGTCCTGGAGCCTCCAGCTGAACGCCTGGCACAGCGGGCGCCGGGAGACGGTGGCTGGTCACTACCACCACATTGTAATGCTGCTGGATTACGAGGCGGGAACGCTGACGTACTACGAAGACAGGCAGATGAGGCTGCATTCCTTCTACTGTGCCTTCACTCAGGAGCTGTTCCCCCGCCTGTCGGATAGGGGAGGGCGTCAGCGTCACCCTCTGCTCGCCATGACAACACGAAAGGGAACAACTGAGCTAACACTGTCATAAGGGACTAGTCTTGCAAAGCTGATGAGTGTTTTGATCTCTCCTTACTGTACAGATGTTTTTACAGTCCTGTTGTGGGACACGGACTTGAACGGGAGCGACTAGtaagtacatacagtgccttgcgaaagtattcggcccccttgaactttgcg

Function

NR:

description
tripartite motif-containing protein 65-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468803.2 False 1706 mRNA 0.54 4 9133541 9138698
TU1530625 True 1604 TUCP 0.55 4 9133615 9138670

Neighbor

gene id symbol gene type direction distance location
LOC110491319 un13d coding downstream 10627 9108123 ~ 9122914 (-)
LOC110491318 h3f3b coding downstream 46407 9084787 ~ 9087134 (-)
LOC110491317 LOC106578872 coding downstream 52257 9055755 ~ 9081284 (-)
LOC110491316 LOC106578868 coding downstream 173580 8937307 ~ 8959961 (-)
trnar-ucg-3 NA coding downstream 202559 8930910 ~ 8930982 (-)
mmp25b mmp25 coding upstream 37093 9175791 ~ 9196172 (-)
LOC110491326 narf coding upstream 71195 9209893 ~ 9232998 (-)
LOC110491328 LOC106578885 coding upstream 117169 9255867 ~ 9272745 (-)
LOC110491329 LOC106578906 coding upstream 453974 9592672 ~ 9598641 (-)
LOC110492818 cacna1g coding upstream 515147 9653845 ~ 9882388 (-)
G1338623 NA non-coding downstream 1491 9129891 ~ 9132050 (-)
G1338650 NA non-coding downstream 33601 9097371 ~ 9099940 (-)
G1338642 NA non-coding downstream 50631 9082649 ~ 9082910 (-)
G1338633 NA non-coding downstream 58415 9062243 ~ 9075126 (-)
G1338634 NA non-coding downstream 66761 9066466 ~ 9066780 (-)
G1338665 NA non-coding upstream 15819 9154517 ~ 9154845 (-)
G1338667 NA non-coding upstream 19164 9157862 ~ 9158091 (-)
G1338670 NA non-coding upstream 21015 9159713 ~ 9160103 (-)
G1338673 NA non-coding upstream 25534 9164232 ~ 9164648 (-)
G1338674 NA non-coding upstream 26870 9165568 ~ 9165767 (-)
G1338014 NA other downstream 663397 8467208 ~ 8470144 (-)
G1337783 NA other downstream 720474 8412771 ~ 8413067 (-)
LOC110492875 LOC106578856 other downstream 1327625 7777876 ~ 7806345 (-)
LOC110491271 cssa19h6orf118 other downstream 2381043 6738304 ~ 6757114 (-)
G1336033 NA other downstream 2829810 6303007 ~ 6303731 (-)
G1339219 NA other upstream 564418 9703116 ~ 9703631 (-)
G1339765 NA other upstream 1124576 10263274 ~ 10263742 (-)
G1340519 NA other upstream 1885404 11024102 ~ 11025202 (-)
LOC110491342 LOC106578908 other upstream 2514342 11652429 ~ 11667766 (-)
G1341480 LOC106578921 other upstream 2851546 11946567 ~ 12097768 (-)

Expression

LOC110491322(LOC106589467) Expression in all Baseline Samples

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LOC110491322(LOC106589467) Expression in each Bioproject

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LOC110491322(LOC106589467) Expression in each Sample
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Co-expression Network