LOC110491321 (mrpl38)


Basic Information

Item Value
gene id LOC110491321
gene name mrpl38
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 9084767 ~ 9143672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564685.2
AGATGAGTACAGTTCTATGAATCAAAGGTAAAACACTTAACATATTGTCATTCTAAGATTCCATTTTAAAGTAAATGTAGCTCACCGGTGTAATAAATTAATATAGGGCATCTAATTTGAATACAGTAGCTGGGAATCCGCCTCGCCAAATTACATATGAAGCGCCATATGATGACGAAGTACTCATAAATATCATACGTAGATATCTATACTCCACATGCCGGATGTTACAGTTTGCGTTTTTCGTCATTCACCACCAAAATGGCGTTGCGTATGCTTTGCTCCTCTGTGCTGCGAACGGGCACAGATATAGGGGTCAGCAATGCCAGGACATTTGGAACTGCAGCCATTTTATGCCGACGGTCTGCTCCATTGGGACCAATGCCAAATGAGGACATAGACTTCAAAAACTTGGAATCACTCGAAAAGTATCGCAGTTACACACGCTACCTCAAGAAAGCAGAGGAGGCGAAGAACACACCAGCCTGGTGGAAGACCTACAGACAGTATCAGGAGCAAGAGGACCCTGGGCATGTTTTCTCTCCTGTATGTCATTCTGGTCCAGATGTGGAGCGAGCCAACATTGGGCTGCCACATTGCCGGCCCTCCAGGGTGAAGGAAGCGAGGGAGCGGAAGAGGGTGGTGAAGGAGAACAGACGTAGTATAGAGCTGGAGAGAGCCATGCGTCTGCGCACCTTTAAGGTCTCCCTGGATCGGGTGCAGGCAGGCTGGGAGGAGACGAGCGGCCCGTACCATGTCCAGAGGCTAGCGGATCACTATGGGATCTTCAAGGATCTGTTCCCCATGGCCTACTTCTACCCCCGCTTCACACTGTGTGTCAGCTACGGCCAGGATAGCCCAGCACAAGTACATTATGGGAACCACTTGACCCCCACAGAGGCTGCTGTGGCACCTCAGGTCAGTTTTGAGGCAGAGGAGGGCTCCATATGGACACTGCTGCTCACCAGcccagATGAGCATCTGCTGGACAGTGAAGGGGAGTATGTGCACTGGCTGGTTGGGAACATCCCAGGTGGGGCTGTGACCTCAGGAGAGGAGCTGTGTCCATACCTGGCCCCGATCCCTGCTAAGGGCACTGGCTTTCACCGCTATGTTTACATCTTGTTCAGACAGGAAGAAACCATCGACTTCCATGAAGACATCCGACCGCTGCCGTGTGTGTCTCTGTCAGAGCGGAGCTTTAAGACGGTAGAGTTCTACAGGAAGCATCAGGACAGCATGACTCCAGCAGGCCTCTCCTTCTTCCAGAGTCAGTGGGACCAGTCTGTTACCCACACTTTCCATAACATATTAGACATGAAAGAGCCCGTGTTTGAGTTTGAGCGGCCTCCTGTGTACCACCCTCCTCAGGTGAAGTACCCTCATGGACAGCCCCTACGGTACCTGGACAGGTACAGAGACGGACAGGAGCACACCTACGGAATCTACTGATGTGTGCAATCTGGATGGACACACACAGTCCAATTATGGTTGATGTTAATATAATAAAGCATTTTTTTTCTATGAAA
>XM_021564686.2
AGATGAGTACAGTTCTATGAATCAAAGGTAAAACACTTAACATATTGTCATTCTAAGATTCCATTTTAAAGTAAATGTAGCTCACCGGTGTAATAAATTAATATAGGGCATCTAATTTGAATACAGTAGCTGGGAATCCGCCTCGCCAAATTACATATGAAGCGCCATATGATGACGAAGTACTCATAAATATCATACGTAGATATCTATACTCCACATGCCGGATGTTACAGTTTGCGTTTTTCGTCATTCACCACCAAAATGGCGTTGCGTATGCTTTGCTCCTCTGTGCTGCGAACGGGCACAGATATAGGGGTCAGCAATGCCAGGACATTTGGAACTGCAGCCATTTTATGCCGACGGTCTGCTCCATTGGGACCAATGCCAAATGAGGACATAGACTTCAAAAACTTGGAATCACTCGAAAAGTATCGCAGTTACACACGCTACCTCAAGAAAGCAGAGGAGGCGAAGAACACACCAGCCTGGTGGAAGACCTACAGACAGTATCAGGAGCAAGAGGACCCTGGGCATGGTCCAGATGTGGAGCGAGCCAACATTGGGCTGCCACATTGCCGGCCCTCCAGGGTGAAGGAAGCGAGGGAGCGGAAGAGGGTGGTGAAGGAGAACAGACGTAGTATAGAGCTGGAGAGAGCCATGCGTCTGCGCACCTTTAAGGTCTCCCTGGATCGGGTGCAGGCAGGCTGGGAGGAGACGAGCGGCCCGTACCATGTCCAGAGGCTAGCGGATCACTATGGGATCTTCAAGGATCTGTTCCCCATGGCCTACTTCTACCCCCGCTTCACACTGTGTGTCAGCTACGGCCAGGATAGCCCAGCACAAGTACATTATGGGAACCACTTGACCCCCACAGAGGCTGCTGTGGCACCTCAGGTCAGTTTTGAGGCAGAGGAGGGCTCCATATGGACACTGCTGCTCACCAGcccagATGAGCATCTGCTGGACAGTGAAGGGGAGTATGTGCACTGGCTGGTTGGGAACATCCCAGGTGGGGCTGTGACCTCAGGAGAGGAGCTGTGTCCATACCTGGCCCCGATCCCTGCTAAGGGCACTGGCTTTCACCGCTATGTTTACATCTTGTTCAGACAGGAAGAAACCATCGACTTCCATGAAGACATCCGACCGCTGCCGTGTGTGTCTCTGTCAGAGCGGAGCTTTAAGACGGTAGAGTTCTACAGGAAGCATCAGGACAGCATGACTCCAGCAGGCCTCTCCTTCTTCCAGAGTCAGTGGGACCAGTCTGTTACCCACACTTTCCATAACATATTAGACATGAAAGAGCCCGTGTTTGAGTTTGAGCGGCCTCCTGTGTACCACCCTCCTCAGGTGAAGTACCCTCATGGACAGCCCCTACGGTACCTGGACAGGTACAGAGACGGACAGGAGCACACCTACGGAATCTACTGATGTGTGCAATCTGGATGGACACACACAGTCCAATTATGGTTGATGTTAATATAATAAAGCATTTTTTTTCTATGAAA
>XM_021564687.2
AGATGAGTACAGTTCTATGAATCAAAGGTAAAACACTTAACATATTGTCATTCTAAGATTCCATTTTAAAGTAAATGTAGCTCACCGGTGTAATAAATTAATATAGGGCATCTAATTTGAATACAGTAGCTGGGAATCCGCCTCGCCAAATTACATATGAAGCGCCATATGATGACGAAGTACTCATAAATATCATACGTAGATATCTATACTCCACATGCCGGATGTTACAGTTTGCGTTTTTCGTCATTCACCACCAAAATGGCGTTGCGTATGCTTTGCTCCTCTGTGCTGCGAACGGGCACAGATATAGGGGTCAGCAATGCCAGGACATTTGGAACTGCAGCCATTTTATGCCGACGGTCTGCTCCATTGGGACCAATGCCAAATGAGGACATAGACTTCAAAAACTTGGAATCACTCGAAAAGTATCGCAGTTACACACGCTACCTCAAGAAAGCAGAGGAGGCGAAGAACACACCAGCCTGGTGGAAGACCTACAGACAGTATCAGGAGCAAGAGGACCCTGGGCATGATGTGGAGCGAGCCAACATTGGGCTGCCACATTGCCGGCCCTCCAGGGTGAAGGAAGCGAGGGAGCGGAAGAGGGTGGTGAAGGAGAACAGACGTAGTATAGAGCTGGAGAGAGCCATGCGTCTGCGCACCTTTAAGGTCTCCCTGGATCGGGTGCAGGCAGGCTGGGAGGAGACGAGCGGCCCGTACCATGTCCAGAGGCTAGCGGATCACTATGGGATCTTCAAGGATCTGTTCCCCATGGCCTACTTCTACCCCCGCTTCACACTGTGTGTCAGCTACGGCCAGGATAGCCCAGCACAAGTACATTATGGGAACCACTTGACCCCCACAGAGGCTGCTGTGGCACCTCAGGTCAGTTTTGAGGCAGAGGAGGGCTCCATATGGACACTGCTGCTCACCAGcccagATGAGCATCTGCTGGACAGTGAAGGGGAGTATGTGCACTGGCTGGTTGGGAACATCCCAGGTGGGGCTGTGACCTCAGGAGAGGAGCTGTGTCCATACCTGGCCCCGATCCCTGCTAAGGGCACTGGCTTTCACCGCTATGTTTACATCTTGTTCAGACAGGAAGAAACCATCGACTTCCATGAAGACATCCGACCGCTGCCGTGTGTGTCTCTGTCAGAGCGGAGCTTTAAGACGGTAGAGTTCTACAGGAAGCATCAGGACAGCATGACTCCAGCAGGCCTCTCCTTCTTCCAGAGTCAGTGGGACCAGTCTGTTACCCACACTTTCCATAACATATTAGACATGAAAGAGCCCGTGTTTGAGTTTGAGCGGCCTCCTGTGTACCACCCTCCTCAGGTGAAGTACCCTCATGGACAGCCCCTACGGTACCTGGACAGGTACAGAGACGGACAGGAGCACACCTACGGAATCTACTGATGTGTGCAATCTGGATGGACACACACAGTCCAATTATGGTTGATGTTAATATAATAAAGCATTTTTTTTCTATGAAA
>TU1530529
TGAAAACCACCAAACAAGCATTTACTTGTAAACACATTTAATAGAAAGACAATGTGACACTCATAAATATTAAATGTAGCTGCCAAGGTTTGTTGCatgttggaaaaataacattgtaAAAAACAGTCCAGAATATACACAGTCTTGGTCATCCTCCTGGCCATCCCTGACAGTGTCAGGAGGAGTAACTGCATAGACAATCCACCCGACACCATTATGGAGTGCTAGGAGTGAACTGTTGTGCAAgacatgctggcagactgctgaGACAAAGGGTGGAAATAGATGAGACcctgacacaccaccccagaagCTGACCCAACCACAAACACTCTGTCATCTAGAGTATGTATTACTGTCACCCTAAATGAGCCAGTTAACATGTGAAGCCACCTGACTGAAGTCAGGGTGACAGTCATGTAAATCGTTCTATCCTCTAAGATAAAAACAAGCCTCATTTGCAATTGAAGGCAAGCCGATCGTCCTATCTGCACACTAACCATATCTGATCGTTACCTCATTCTAAAATACATTACAAAAAGAAAAACCAAGAAATAACAATGTTTTTAAAATTCACAAAATGGTTAAGTGAGATAAATAGAATTGTGTGTCTAGAGCAGGAGGTCAAGTACCATTTAGGCCCTCTCTCCCCTTATCCTGCGGGCCAGCTGGATGTCTTTGGGCATAATGGTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTATCCTCAAACAGACCCACCAGGTACGCTTCGCTCGCCTCCTGCAcaaagaca
>TU1530531
TGAAAACCACCAAACAAGCATTTACTTGTAAACACATTTAATAGAAAGACAATGTGACACTCATAAATATTAAATGTAGCTGCCAAGGTTTGTTGCatgttggaaaaataacattgtaAAAAACAGTCCAGAATATACACAGTCTTGGTCATCCTCCTGGCCATCCCTGACAGTGTCAGGAGGAGTAACTGCATAGACAATCCACCCGACACCATTATGGAGTGCTAGGAGTGAACTGTTGTGCAAgacatgctggcagactgctgaGACAAAGGGTGGAAATAGATGAGACcctgacacaccaccccagaagCTGACCCAACCACAAACACTCTGTCATCTAGAGTATGTATTACTGTCACCCTAAATGAGCCAGTTAACATGTGAAGCCACCTGACTGAAGTCAGGGTGACAGTCATGTAAATCGTTCTATCCTCTAAGATAAAAACAAGCCTCATTTGCAATTGAAGGCAAGCCGATCGTCCTATCTGCACACTAACCATATCTGATCGTTACCTCATTCTAAAATACATTACAAAAAGAAAAACCAAGAAATAACAATGTTTTTAAAATTCACAAAATGGTTAAGTGAGATAAATAGAATTGTGTGTCTAGAGCAGGAGGTCAAGTACCATTTAGGCCCTCTCTCCCCTTATCCTGCGGGCCAGCTGGATGTCTTTGGGCATAATGGTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTATCCTCAAACAGACCCACCAGGTACGCTTCGCTCGCCTCCTGccctctctcctcctacctTCCGTCCAACGGTCTCTAAGGCAGAGCGTATCTCTCTGCTGAGGACCCCCTGTGCATGCTGCAGCTGCGAGGGGAGCACGTTGTGGAACTGAGGGTCCCCTATCACGTGACGTGTGCGTTCTCGAAGCGCTGCCCAGTTGAGCTGCTGGGGCAGGCGGGTCAGCACCGACCTCAGGTGTTCCAAGTCATTCACTACTACACACagCTTGTTGACAGCGCTGCTGTGTGTGTCTCTGTCAGAGCGGAGCTTTAAGACGGTAGAGTTCTACAGGAAGCATCAGGACAGCATGACTCCAGCAGGCCTCTCCTTCTTCCAGAGTCAGTGGGACCAGTCTGTTACCCACACTTTCCATAACATATTAGACATGAAAGAGCCCGTGTTTGAGTTTGAGCGGCCTCCTGTGTACCACCCTCCTCAGGTGAAGTACCCTCATGGACAGCCCCTACGGTACCTGGACAGGTACAGAGACGGACAGGAGCACACCTACGGAATCTACTGATGTGTGCAATCTGGATGGACACACACAGTCCAATTATGGTTGATGTTAATATAATAAAGCATTTTTTTTCTATGAAA

Function

symbol description
mrpl38 Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL38 (mitochondrial ribosomal protein L38).

NR:

description
39S ribosomal protein L38, mitochondrial isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564685.2 False 1529 mRNA 0.50 9 9138530 9143672
XM_021564686.2 False 1505 mRNA 0.50 9 9138530 9143672
XM_021564687.2 False 1499 mRNA 0.50 9 9138530 9143672
TU1530529 False 777 lncRNA 0.43 2 9084767 9123899
TU1530531 True 1362 lncRNA 0.47 5 9084767 9143672

Neighbor

gene id symbol gene type direction distance location
LOC110491320 LOC106578876 coding upstream 7137 9124217 ~ 9131393 (+)
LOC110492817 LOC106578874 coding upstream 30323 9091144 ~ 9108207 (+)
LOC110492816 LOC106578871 coding upstream 83982 9023761 ~ 9054548 (+)
LOC110492815 LOC106578870 coding upstream 129744 8978243 ~ 9008786 (+)
trnaq-cug-3 NA coding upstream 211369 8927090 ~ 8927161 (+)
LOC110491323 NA coding downstream 19811 9163483 ~ 9171479 (+)
LOC110491327 LOC106578881 coding downstream 90353 9234025 ~ 9237375 (+)
LOC118939487 ogfod3 coding downstream 95309 9238981 ~ 9255876 (+)
galk1 galk1 coding downstream 1083546 10227218 ~ 10237422 (+)
llgl2 LOC106578897 coding downstream 1093882 10237554 ~ 10270791 (+)
G1338551 NA non-coding upstream 12122 9126044 ~ 9126408 (+)
G1338540 NA non-coding upstream 53800 9084418 ~ 9084730 (+)
G1338348 NA non-coding upstream 123903 9014338 ~ 9014627 (+)
G1338338 NA non-coding upstream 170352 8967941 ~ 8968178 (+)
G1338556 NA non-coding downstream 2600 9146272 ~ 9146509 (+)
G1338572 NA non-coding downstream 22131 9165803 ~ 9166020 (+)
G1338569 NA non-coding downstream 30138 9173810 ~ 9173996 (+)
G1338578 NA non-coding downstream 64155 9207827 ~ 9208112 (+)
G1338579 NA non-coding downstream 64727 9208399 ~ 9208740 (+)
G1338523 NA other upstream 75384 9060652 ~ 9063146 (+)
G1337942 NA other upstream 499359 8637166 ~ 8639171 (+)
G1337438 NA other upstream 931157 8206833 ~ 8207373 (+)
G1338571 NA other downstream 34375 9178047 ~ 9183173 (+)
G1339018 NA other downstream 482267 9625939 ~ 9626400 (+)
G1339045 NA other downstream 558303 9701975 ~ 9702380 (+)
G1339525 NA other downstream 916206 10059878 ~ 10060130 (+)
G1341172 NA other downstream 2638056 11781728 ~ 11782891 (+)
LOC110491313 LOC106578866 coding upstream 185839 8887340 ~ 8898928 (+)
LOC110491312 NA coding upstream 224766 8850319 ~ 8860001 (+)
G1338329 NA non-coding upstream 124783 8959401 ~ 8959984 (+)
G1337433 LOC106578852 other upstream 886308 8197762 ~ 8198459 (+)

Expression


Co-expression Network