XLOC_032308 (FAM107A)


Basic Information

Item Value
gene id XLOC_032308
gene name FAM107A
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 46341306 ~ 46346978 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063076
CAGAGGTGGGCAAGAGAAGAGGATTTAGACCACAGCAAGTTGCTTCCTGAGCACACGGACTATGAAGAGCTCATAAGGCCCAAAAAGCTCCACAATCCCATCAAAGCGTCCAAGAGCCACCGGGAGCTCCAGCGAGAGCTGATTATTACACACAAAAGAGGAGTGGTGGTGGAGGAGAAGCCGGAGTTACAGAGAGTTCTGGAACAGAGGAACAGAGCTCAAGCTCTGAAACAAGAGCAAAAACAAGAAGAGGAGAAATCACCCTTGGAGCAGGAGTTACTGAAGAGACAGATGAGGTTAGAGAAGTTTGAGAAAGAGGCTGAAGAGCAGAGGGAGAGGTTAAAGTGCGCTCCCGAGTTCATTAGAGTCAAGGAGAGTCTGAAGAGGACAGCGATCACGAGTGCTGCGGAGAAAGAGCTGTAATCACACGTCAGCAACAGCCACAGATTTGCAGCTGCAATCAAATTTATTCAGCCACATTTACATGCAAGACATTCTGCTGCTGTGAACAAAAAGGTATGAAAACAGTTCAACCAAGGCATTGGTAAACTATTATAGAAGGGTTATTGATGCATATCTAACTGACTCTA

Function

symbol description
fam107a Predicted to enable actin binding activity. Involved in several processes, including negative regulation of G1/S transition of mitotic cell cycle; negative regulation of focal adhesion assembly; and regulation of cytoskeleton organization. Located in several cellular components, including focal adhesion; ruffle membrane; and stress fiber.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000075540

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063076 True 590 mRNA 0.46 3 46341306 46346978

Neighbor

gene id symbol gene type direction distance location
XLOC_032307 NA coding upstream 4210 46320693 ~ 46337096 (+)
XLOC_032306 NA coding upstream 20778 46309736 ~ 46320528 (+)
XLOC_032305 NA coding upstream 32246 46258820 ~ 46309060 (+)
XLOC_032304 BX663614.1 coding upstream 315343 46025846 ~ 46025963 (+)
XLOC_032303 cenps coding upstream 404306 45934682 ~ 45937000 (+)
XLOC_032309 pbrm1l coding downstream 59587 46406565 ~ 46431597 (+)
XLOC_032310 stau1 coding downstream 84870 46431848 ~ 46454823 (+)
XLOC_032311 si:dkey-7k24.5 coding downstream 134046 46481024 ~ 46494084 (+)
XLOC_032312 oxtrl coding downstream 321739 46668717 ~ 46687079 (+)
XLOC_032313 tespa1 coding downstream 350732 46697710 ~ 46722893 (+)
XLOC_032300 LO018004.1 non-coding upstream 735910 45605280 ~ 45605396 (+)
XLOC_032298 CABZ01009812.1 non-coding upstream 985781 45355409 ~ 45355525 (+)
XLOC_032295 NA non-coding upstream 1258017 44987628 ~ 45083289 (+)
XLOC_032314 CU639408.1 non-coding downstream 402528 46749506 ~ 46749624 (+)
XLOC_032315 NA non-coding downstream 423717 46770695 ~ 46975247 (+)
XLOC_032316 CU634018.1 non-coding downstream 523206 46870184 ~ 46870298 (+)
XLOC_032317 NA non-coding downstream 633139 46980117 ~ 46981872 (+)
XLOC_032318 CABZ01055225.1 non-coding downstream 931161 47278139 ~ 47278257 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_12763120_12765105 NA coding CI01000340 null 12763120 ~ 12765215 (+)