LOC110491327 (LOC106578881)


Basic Information

Item Value
gene id LOC110491327
gene name LOC106578881
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 9234025 ~ 9237375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564694.2
CATCCAATCAGTGAAGACTTACCCCGGAAGGAAGCAACACCCCACCCACCGTGTGTTGTTGCTGTAAAATGAAATGAATTGAAACTTCTCTAAAAATTGTAAATGTAAATTTCACTATCATCAATCCGATTTGTTACATTGTTTCCGGTGCgtatcattttcgggaatttcgTTGAAGAGTGTAAGGTAAGACAACAATTAATAGATGGGCTATATGCAGGTAGAGGAGCACAATTCCAACATGTTACATCTGAAAAGGTCACCTGGCATCCGCTCCTGGTCGCTGCTTGTAGGTATTGCGTCCATTGGCCTGGCTGCTGCGTACTACACTTCAGACAGTGTCCTGTGGAAGCTGTTCTACGTGACGGGCTGTCTGTTCGTGGCCATGCAGAAcatggaggagtgggaggaggcaGTGTTTGATAAAACCAAGAATGTGATAGAGCTGAAGACCTTCAGTCTGTACACTCTGATTCTCACCATGTGGAGGAGAGGCCAGGAGAAAGtgGTGCTGGACATGAGGCACCTGCGTGCCGTGTGTGTTCAGGAGGAGAAGGTGCGCTACCTGGGAAAGGGTTACCTGCTGGTGCTGCGGCTGACAACCGGTTTCTCCTACCCCCTCACACAGAGCGCCACCATGGGGGGGCGCAGTGATGTGGAGGCGGTGGCTTCGTTGCTCAAGCGTTTCCTGGGTCTGGAGGAGCTCCAGTGTCGctgggagcaggaggaagaggaagaggaggaagatgaggaagatgACCTGGACCCCAGCACTGACTCAGAAGAAGAGGGGGACTTTGAACCCTCAGTGCAGTAGtgatgaggagaggaagccactgtAGACTTgaaatgcacacaaacatattttaCAGCATTTCGTAGTATTATCCCTGATACTGTAAATGGCCTGAAATACTCTCTTGAGTGGTCGTTTTCCACAGAAGATTTAAACTAAATCATAGTTTGGTGTCTGGCctgttcttaaaaaaaaaaaaaatcattactGTATAGTATCTGCGTTACACACCTATCCTTATAGTTACAGTGCCTTTTTATTTCAATGTAATCAGTAtttgtgtggaaaaactcaaaACTTCCAACATGCCAACAGGATAGGCAACACATTGGTGTGTTTGAGACCACCCAAGAGCATCACTCTGCTCACTACAACCATCCATCTGAATGCATGTGACCGTAAACTATAATCAAGCATGAAGAATTTCCAGGGATCAGTTAAGAATATTTATGAATGTCAATACTTGCGTGTTCATGTGTCTGTCAGCATTCATAGGTCTTATTGCTAGGGCCGAACAGAATCCGGGAAGGACGAAACATCTTGAAAACAAAACATCTTAATCTAATCTACCATGGTTTAATATTCATAGAGAACGCTACAGATTGTCTCAGGTAACATTCCTGTCCATAGACTGTAATGTGTTAGTAATAATGTGTATATTTGACAGGAAGGCTGTATTACATTGCATATGGACGGTAATAACTACTGTGTCTGTTTATGAGAGGAAGGTGAGTGATGATGCCTTGTGTTGCTTGAAAGAAAGACGATGAATGAGAGATTTGTaagtttaaatttttttttatgtGTCCAGTTCCTGCTGGATGACTGCAGGTACTGATTtacctttcttttt
>XM_021564693.2
TTGTTACATTGTTTCCGGTGCgtatcattttcgggaatttcgTTGAAGAGTGTAAGATGGGCTATATGCAGGTAGAGGAGCACAATTCCAACATGTTACATCTGAAAAGGTCACCTGGCATCCGCTCCTGGTCGCTGCTTGTAGGTATTGCGTCCATTGGCCTGGCTGCTGCGTACTACACTTCAGACAGTGTCCTGTGGAAGCTGTTCTACGTGACGGGCTGTCTGTTCGTGGCCATGCAGAAcatggaggagtgggaggaggcaGTGTTTGATAAAACCAAGAATGTGATAGAGCTGAAGACCTTCAGTCTGTACACTCTGATTCTCACCATGTGGAGGAGAGGCCAGGAGAAAGtgGTGCTGGACATGAGGCACCTGCGTGCCGTGTGTGTTCAGGAGGAGAAGGTGCGCTACCTGGGAAAGGGTTACCTGCTGGTGCTGCGGCTGACAACCGGTTTCTCCTACCCCCTCACACAGAGCGCCACCATGGGGGGGCGCAGTGATGTGGAGGCGGTGGCTTCGTTGCTCAAGCGTTTCCTGGGTCTGGAGGAGCTCCAGTGTCGctgggagcaggaggaagaggaagaggaggaagatgaggaagatgACCTGGACCCCAGCACTGACTCAGAAGAAGAGGGGGACTTTGAACCCTCAGTGCAGTAGtgatgaggagaggaagccactgtAGACTTgaaatgcacacaaacatattttaCAGCATTTCGTAGTATTATCCCTGATACTGTAAATGGCCTGAAATACTCTCTTGAGTGGTCGTTTTCCACAGAAGATTTAAACTAAATCATAGTTTGGTGTCTGGCctgttcttaaaaaaaaaaaaaatcattactGTATAGTATCTGCGTTACACACCTATCCTTATAGTTACAGTGCCTTTTTATTTCAATGTAATCAGTAtttgtgtggaaaaactcaaaACTTCCAACATGCCAACAGGATAGGCAACACATTGGTGTGTTTGAGACCACCCAAGAGCATCACTCTGCTCACTACAACCATCCATCTGAATGCATGTGACCGTAAACTATAATCAAGCATGAAGAATTTCCAGGGATCAGTTAAGAATATTTATGAATGTCAATACTTGCGTGTTCATGTGTCTGTCAGCATTCATAGGTCTTATTGCTAGGGCCGAACAGAATCCGGGAAGGACGAAACATCTTGAAAACAAAACATCTTAATCTAATCTACCATGGTTTAATATTCATAGAGAACGCTACAGATTGTCTCAGGTAACATTCCTGTCCATAGACTGTAATGTGTTAGTAATAATGTGTATATTTGACAGGAAGGCTGTATTACATTGCATATGGACGGTAATAACTACTGTGTCTGTTTATGAGAGGAAGGTGAGTGATGATGCCTTGTGTTGCTTGAAAGAAAGACGATGAATGAGAGATTTGTaagtttaaatttttttttatgtGTCCAGTTCCTGCTGGATGACTGCAGGTACTGATTtacctttcttttt
>XM_036946108.1
TACACATTATTTCATTCAAAGTATCATATAGGCTAGATTATGAGCGATCGTAAATAGTCTACCATACGGTTCTTCGATGCTCTGGGGTAGGATTGTCTTTTAGGGGCTTTGGCACAAAAACATACCCGCTGGGGGTGTAGGTTTAATATTAATAATAAGGTATGGTTACGGATGAATGCAATGCCGGATGTTTGAACCGGGAAATTAGAGATGAGGGAATGTGGAAGCAGATCTGAAGTACAAAAAGTCCTGCTCCTGACAGACATCCTCCCTTCTTCCGTTTCCTTGAAGTAACCACTGACCTATCATAGATATTCAAGTGTAAGCAACGGTTCTTCAATATTACATAGCTTTTGCCTATCCTTCTTGTATACAACTGTAATGTCTGTCTGGCAGATGGGCTATATGCAGGTAGAGGAGCACAATTCCAACATGTTACATCTGAAAAGGTCACCTGGCATCCGCTCCTGGTCGCTGCTTGTAGGTATTGCGTCCATTGGCCTGGCTGCTGCGTACTACACTTCAGACAGTGTCCTGTGGAAGCTGTTCTACGTGACGGGCTGTCTGTTCGTGGCCATGCAGAAcatggaggagtgggaggaggcaGTGTTTGATAAAACCAAGAATGTGATAGAGCTGAAGACCTTCAGTCTGTACACTCTGATTCTCACCATGTGGAGGAGAGGCCAGGAGAAAGtgGTGCTGGACATGAGGCACCTGCGTGCCGTGTGTGTTCAGGAGGAGAAGGTGCGCTACCTGGGAAAGGGTTACCTGCTGGTGCTGCGGCTGACAACCGGTTTCTCCTACCCCCTCACACAGAGCGCCACCATGGGGGGGCGCAGTGATGTGGAGGCGGTGGCTTCGTTGCTCAAGCGTTTCCTGGGTCTGGAGGAGCTCCAGTGTCGctgggagcaggaggaagaggaagaggaggaagatgaggaagatgACCTGGACCCCAGCACTGACTCAGAAGAAGAGGGGGACTTTGAACCCTCAGTGCAGTAGtgatgaggagaggaagccactgtAGACTTgaaatgcacacaaacatattttaCAGCATTTCGTAGTATTATCCCTGATACTGTAAATGGCCTGAAATACTCTCTTGAGTGGTCGTTTTCCACAGAAGATTTAAACTAAATCATAGTTTGGTGTCTGGCctgttcttaaaaaaaaaaaaaatcattactGTATAGTATCTGCGTTACACACCTATCCTTATAGTTACAGTGCCTTTTTATTTCAATGTAATCAGTAtttgtgtggaaaaactcaaaACTTCCAACATGCCAACAGGATAGGCAACACATTGGTGTGTTTGAGACCACCCAAGAGCATCACTCTGCTCACTACAACCATCCATCTGAATGCATGTGACCGTAAACTATAATCAAGCATGAAGAATTTCCAGGGATCAGTTAAGAATATTTATGAATGTCAATACTTGCGTGTTCATGTGTCTGTCAGCATTCATAGGTCTTATTGCTAGGGCCGAACAGAATCCGGGAAGGACGAAACATCTTGAAAACAAAACATCTTAATCTAATCTACCATGGTTTAATATTCATAGAGAACGCTACAGATTGTCTCAGGTAACATTCCTGTCCATAGACTGTAATGTGTTAGTAATAATGTGTATATTTGACAGGAAGGCTGTATTACATTGCATATGGACGGTAATAACTACTGTGTCTGTTTATGAGAGGAAGGTGAGTGATGATGCCTTGTGTTGCTTGAAAGAAAGACGATGAATGAGAGATTTGTaagtttaaatttttttttatgtGTCCAGTTCCTGCTGGATGACTGCAGGTACTGATTtacctttcttttt

Function

NR:

description
PREDICTED: uncharacterized protein C17orf62 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564694.2 False 1649 mRNA 0.44 6 9234025 9237375
XM_021564693.2 False 1500 mRNA 0.45 6 9234155 9237375
XM_036946108.1 True 1840 mRNA 0.44 5 9234237 9237375

Neighbor

gene id symbol gene type direction distance location
LOC110491323 NA coding upstream 62546 9163483 ~ 9171479 (+)
LOC110491321 mrpl38 coding upstream 90353 9084767 ~ 9143672 (+)
LOC110491320 LOC106578876 coding upstream 102632 9124217 ~ 9131393 (+)
LOC110492817 LOC106578874 coding upstream 125818 9091144 ~ 9108207 (+)
LOC110492816 LOC106578871 coding upstream 179477 9023761 ~ 9054548 (+)
LOC118939487 ogfod3 coding downstream 1606 9238981 ~ 9255876 (+)
galk1 galk1 coding downstream 989843 10227218 ~ 10237422 (+)
llgl2 LOC106578897 coding downstream 1000179 10237554 ~ 10270791 (+)
myo15b LOC106578894 coding downstream 1052478 10289853 ~ 10320827 (+)
LOC110491336 LOC106578893 coding downstream 1092703 10330078 ~ 10373090 (+)
G1338597 NA non-coding upstream 2201 9231314 ~ 9231824 (+)
G1338579 NA non-coding upstream 25285 9208399 ~ 9208740 (+)
G1338578 NA non-coding upstream 25913 9207827 ~ 9208112 (+)
G1338569 NA non-coding upstream 60029 9173810 ~ 9173996 (+)
G1338572 NA non-coding upstream 68005 9165803 ~ 9166020 (+)
G1338736 NA non-coding downstream 74947 9312322 ~ 9312624 (+)
G1338738 NA non-coding downstream 77007 9314382 ~ 9314587 (+)
G1338740 NA non-coding downstream 78774 9316149 ~ 9316401 (+)
G1338741 NA non-coding downstream 79406 9316781 ~ 9316988 (+)
G1338764 NA non-coding downstream 97354 9334729 ~ 9334933 (+)
G1338571 NA other upstream 50852 9178047 ~ 9183173 (+)
G1338523 NA other upstream 170879 9060652 ~ 9063146 (+)
LOC110492815 LOC106578870 other upstream 225281 8978243 ~ 9008786 (+)
G1337942 NA other upstream 594854 8637166 ~ 8639171 (+)
G1339018 NA other downstream 388564 9625939 ~ 9626400 (+)
G1339045 NA other downstream 464600 9701975 ~ 9702380 (+)
G1339525 NA other downstream 822503 10059878 ~ 10060130 (+)
G1341172 NA other downstream 2544353 11781728 ~ 11782891 (+)
LOC110492879 NA other downstream 2720151 11952562 ~ 11958858 (+)

Expression


Co-expression Network